ISRhsp6
- Family IS5
- Group IS5
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_009428 | ND | Rhodobacter sphaeroides | Rhodobacter sphaeroides ATCC 17025 |
DNA section
IS Length : 1486 bp
Ends
IR Length : 13/16
IRL : GTCCGGTCTGAACAACCGTGAAGTGGTTGATTTGGCAGGGAGAACGCGAG
IRR : GTTCAGCCTGAACAACGCGATCAGGCACCTGCGTGGTTATAACCCTGGAG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TTGTCGAGGC | TGAGGA | GCCCACGGTC | 6 |
DNA sequence
GTCCGGTCTGAACAACCGTGAAGTGGTTGATTTGGCAGGGAGAACGCGAGGTTTCTGTCGCCATGGCCTGCAGGATTTCATAGGATTCTGCCCGGAACCC
TGCAATTTCGGTCTGCCGCATGAAGCACCGTCCCCGTCCTCCCGAGCAGAACGACCTCTTCCGGCCGCGCCTCGTCGACATGATCGACATGCGTCACGAG
CTGGTCACGCTGTCGGCGCTGATCGACTGGGAGTTCTTCGAGCGCGAATGGGCCGGGTTCTTCCCGTCGACGACCGGACGACCGGCGACATCGCCCCGGC
TCGTGGCGGGGCTGCTCTATCTGCAGCACGCGTTCCGGCTGTCGGACGAGGCTGTGGTCGCGCGCTGGGTCGAGAACCCCTACTTTCAGCATTTCACCGG
CGAGACCTTCTTTCAGCATCGCCCGCCGATCGACCCGACCTCGCTCATCCGGTGGCGCAAGCGGATCGGGGAAGAGGGAGTCGAGTGGCTGCTGACCAAG
ACCATCGAGGCTGGCCGGAAGTCGGGCGCCGTCGACGATGCCTGCCTCGACGAGGTGGCGGTCGACACGACCGTCATGGAAAAGAACATCGCGCACCCGA
CGGACTCCCGGCTCTACGAGCGGGCGCGCAGCCAACTGGTGGCCCTGGCCCGGGACGCCGGCATCGAGTTGCGGCAGACCTACGCGCGCCTCGCGCCGCG
TCTGGCGGCGCAGGTCGGGCGTTACGCCCATGCCAAGCAGTTCCGGCGCATGCGCAAGGCGTTGAGAACGCTGAAGGGCTACACCGGCCGCGTGATGCGG
GATCTACGCCGGCAGCTCGACGAGATCCCCGAGGGGCCGTTGCGCGAGCAGGTGCTCGACAAGCTCGTGCTGGTCTCGCGGCTGCTCCACCAGCGGCCGA
AGGACCCGGGCAAGATCTACGCGCTCCATGAGCCGGAGGTCGACTGCATCTCGAAGGGCAAGGCTCGCGTCCGCTACGAGTTCGGCTGCAAGGTCAGCAT
CGCCACCACGCTGAAGGGCGGCTTCGTGGTCGGGATGCGCTCGCTGCCGGGGAACCCTTACGACGGCCACACCCTCAGCGAGGCGCTGGAGCAGGTGGCC
ATCCTCACCGACCACCCGCCGAAGCGGGCTGTCGTCGATCGCGGCTATAAGGGCCATGGCGTCCAGCACACCCAGGTGCTGATCAGCGGCACCCGGCGCG
GCCTGACCCCGGCGCTGACAAAAGCCCTCCGACGGCGCAGCAGCATCGAGCCCGAGATCGGCCACATGAAGAGCGACGGCCGACTGTTACGTTGCTTCCT
GAAGTGCACCTTCGGTGACGCCCTCTTCGCCGTCCTCTGCGGCTGCGGCCACAACATCCGCAAGATCCTCGCCCATCTGAGGAACCTTCTGGCTGTCGTC
ATCGCCCTCATTCTGGCGGCGATCCGGCGGGAGCAACTCCAGGGTTATAACCACGCAGGTGCCTGATCGCGTTGTTCAGGCTGAAC
TGCAATTTCGGTCTGCCGCATGAAGCACCGTCCCCGTCCTCCCGAGCAGAACGACCTCTTCCGGCCGCGCCTCGTCGACATGATCGACATGCGTCACGAG
CTGGTCACGCTGTCGGCGCTGATCGACTGGGAGTTCTTCGAGCGCGAATGGGCCGGGTTCTTCCCGTCGACGACCGGACGACCGGCGACATCGCCCCGGC
TCGTGGCGGGGCTGCTCTATCTGCAGCACGCGTTCCGGCTGTCGGACGAGGCTGTGGTCGCGCGCTGGGTCGAGAACCCCTACTTTCAGCATTTCACCGG
CGAGACCTTCTTTCAGCATCGCCCGCCGATCGACCCGACCTCGCTCATCCGGTGGCGCAAGCGGATCGGGGAAGAGGGAGTCGAGTGGCTGCTGACCAAG
ACCATCGAGGCTGGCCGGAAGTCGGGCGCCGTCGACGATGCCTGCCTCGACGAGGTGGCGGTCGACACGACCGTCATGGAAAAGAACATCGCGCACCCGA
CGGACTCCCGGCTCTACGAGCGGGCGCGCAGCCAACTGGTGGCCCTGGCCCGGGACGCCGGCATCGAGTTGCGGCAGACCTACGCGCGCCTCGCGCCGCG
TCTGGCGGCGCAGGTCGGGCGTTACGCCCATGCCAAGCAGTTCCGGCGCATGCGCAAGGCGTTGAGAACGCTGAAGGGCTACACCGGCCGCGTGATGCGG
GATCTACGCCGGCAGCTCGACGAGATCCCCGAGGGGCCGTTGCGCGAGCAGGTGCTCGACAAGCTCGTGCTGGTCTCGCGGCTGCTCCACCAGCGGCCGA
AGGACCCGGGCAAGATCTACGCGCTCCATGAGCCGGAGGTCGACTGCATCTCGAAGGGCAAGGCTCGCGTCCGCTACGAGTTCGGCTGCAAGGTCAGCAT
CGCCACCACGCTGAAGGGCGGCTTCGTGGTCGGGATGCGCTCGCTGCCGGGGAACCCTTACGACGGCCACACCCTCAGCGAGGCGCTGGAGCAGGTGGCC
ATCCTCACCGACCACCCGCCGAAGCGGGCTGTCGTCGATCGCGGCTATAAGGGCCATGGCGTCCAGCACACCCAGGTGCTGATCAGCGGCACCCGGCGCG
GCCTGACCCCGGCGCTGACAAAAGCCCTCCGACGGCGCAGCAGCATCGAGCCCGAGATCGGCCACATGAAGAGCGACGGCCGACTGTTACGTTGCTTCCT
GAAGTGCACCTTCGGTGACGCCCTCTTCGCCGTCCTCTGCGGCTGCGGCCACAACATCCGCAAGATCCTCGCCCATCTGAGGAACCTTCTGGCTGTCGTC
ATCGCCCTCATTCTGGCGGCGATCCGGCGGGAGCAACTCCAGGGTTATAACCACGCAGGTGCCTGATCGCGTTGTTCAGGCTGAAC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1347 bp | 448 aa | 120 | 1466 | + | No |
Chemistry : DDE
ORF sequence :
MKHRPRPPEQNDLFRPRLVDMIDMRHELVTLSALIDWEFFEREWAGFFPSTTGRPATSPRLVAGLLYLQHAFRLSDEAVVARWVENPYFQHFTGETFFQH
RPPIDPTSLIRWRKRIGEEGVEWLLTKTIEAGRKSGAVDDACLDEVAVDTTVMEKNIAHPTDSRLYERARSQLVALARDAGIELRQTYARLAPRLAAQVG
RYAHAKQFRRMRKALRTLKGYTGRVMRDLRRQLDEIPEGPLREQVLDKLVLVSRLLHQRPKDPGKIYALHEPEVDCISKGKARVRYEFGCKVSIATTLKG
GFVVGMRSLPGNPYDGHTLSEALEQVAILTDHPPKRAVVDRGYKGHGVQHTQVLISGTRRGLTPALTKALRRRSSIEPEIGHMKSDGRLLRCFLKCTFGD
ALFAVLCGCGHNIRKILAHLRNLLAVVIALILAAIRREQLQGYNHAGA
RPPIDPTSLIRWRKRIGEEGVEWLLTKTIEAGRKSGAVDDACLDEVAVDTTVMEKNIAHPTDSRLYERARSQLVALARDAGIELRQTYARLAPRLAAQVG
RYAHAKQFRRMRKALRTLKGYTGRVMRDLRRQLDEIPEGPLREQVLDKLVLVSRLLHQRPKDPGKIYALHEPEVDCISKGKARVRYEFGCKVSIATTLKG
GFVVGMRSLPGNPYDGHTLSEALEQVAILTDHPPKRAVVDRGYKGHGVQHTQVLISGTRRGLTPALTKALRRRSSIEPEIGHMKSDGRLLRCFLKCTFGD
ALFAVLCGCGHNIRKILAHLRNLLAVVIALILAAIRREQLQGYNHAGA
Blast result :
Comments
ISRhsp6 is 96% aa similar to ISRhsp1.
References
1] ISfinder annotation (2010)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Richardson,P., Mackenzie,C., Choudhary,M., Donohue,T.J. and Kaplan,S. (2007) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Richardson,P., Mackenzie,C., Choudhary,M., Donohue,T.J. and Kaplan,S. (2007) Direct submission GenBank.