ISDal2
- Family IS5
- Group IS5
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_011768 | ND | Desulfatibacillum alkenivorans | Desulfatibacillum alkenivorans AK-01 |
DNA section
IS Length : 1478 bp
Ends
IR Length : 12/15
IRL : GTCGCCCCTGAAAAACAAATAAACAATTGAAATTGCTTGATAAATTTTTA
IRR : GTCGATTCTGAAAAAGCCTATTTTTCCTTGGCTACAGCCAACAGCGGGAT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TGGTCGTTAT | TAGCTA | TGCCGGCCGA | 6 |
DNA sequence
GTCGCCCCTGAAAAACAAATAAACAATTGAAATTGCTTGATAAATTTTTAAGTCTGTGTTAACGTATTTTGCAAGAAACACGTCATTTTTCCTTTATAAC
CTTGCAAAATTCGATAGGTAAAATCCATGAAGCCCAGGCAATCTCCAGTCAAAGACCAGCAACAGGACCTGTTTAAAGTGGAACTGGCCCGGATCGTTGA
TCCCAATCACCCCCTGGTGAAGTTATCCAAGGCTGTAAACTGGGACCGTCTGGACGAGGTATTCGGCGAGACTTACTGCCCGGACAACGGGCGTCCTGGT
GTGAGCACCCGCCTGATGGTTTCGCTTCATTATCTCAAGTACACCGAGGACCAGAGTGACGAGCAGGTTTTGAAGAAGTGGGCTGAGAATCCCTACTGGC
AGGTTTTGTCAGGGATGAAATACTTTGAGCATGAGTTGCCCATTGATCCCTCCAGCATGACCCGGTGGCGCAAACGGGTGGGAGAAGCAGGCGCGGAGGA
GCTTTTGAAGGAGACGATCCAGACGGGCCTGGAGCTTGGGGCGGTCAAGTGGTTCCAGCTAAACCGGATCAACGTGGACACGACGGTCCAGGAAAAGGAA
GTCCGTTTCCCCACGGACTCCCGGTTGTACGATCGCGCCAGGGAGCGCCTTGTCAAGGCGGCGAAGGCTCGTGGAATTGTCCTGCGCCAGAGCTACAAGC
GTTTGTCCAAGACCGAGGTTACCAAACAAGGACGCTACGCCCACGCCCGGCAGATGAAACGAGCGGCGCGCAGCACCCGCAAGCTGAAGACCTATCTTGG
GCGCGTCATCCGCGATATTGAGCGCAAGTGTCCTGATCCGGACCGGGAACTGCAGGACCTTTTGAGCGTAGCCAGGCATATCCACGCACGGAAGCAAAAG
GACAAGAACAAGGTGTACAGCGTCCATGCCCCGGAGGTGGAGTGCATCAGCAAGGGCAAGGCCCACAAGCGTTACGAGTTTGGCTGCAAGGTGAGCGTGG
CTGCCACCAGCAAGGGCGGATGGTTTGTGGGGGCCATGGCCTTGCACGGGAATCCCTATGACGGACACACTTTGAAAGGCGCCCTGGCCCAGGTGGAGCG
AATCGCCCGGCAACCTCAACATGCTTTTGTGGACATGGGCTATCGGGGCCACGGCTACGAGGGCGATGTCCAGGTCCATGTGGACAAGCGCCGACGAGGG
CGAACGCCGAAAAGCCTGTGGCGCTGGATGAAGCGCAGGGCGGCGGTTGAGCCAGCCATTGGCCATTTGAAACGGGAACATCGAATGGAGCGAAACCGGC
TTGCCGGAACAGAGGGCGACAAGTTCAACGCCATCCTGTCAGCCGCCGGAATGAACTTTCATAAGCTGCAAAAGTTCCTGGAGGAACTTTTGCGCCTTTA
TTTTTTTCGAATTATGGCGGCTCAATACATCCCGCTGTTGGCTGTAGCCAAGGAAAAATAGGCTTTTTCAGAATCGAC
CTTGCAAAATTCGATAGGTAAAATCCATGAAGCCCAGGCAATCTCCAGTCAAAGACCAGCAACAGGACCTGTTTAAAGTGGAACTGGCCCGGATCGTTGA
TCCCAATCACCCCCTGGTGAAGTTATCCAAGGCTGTAAACTGGGACCGTCTGGACGAGGTATTCGGCGAGACTTACTGCCCGGACAACGGGCGTCCTGGT
GTGAGCACCCGCCTGATGGTTTCGCTTCATTATCTCAAGTACACCGAGGACCAGAGTGACGAGCAGGTTTTGAAGAAGTGGGCTGAGAATCCCTACTGGC
AGGTTTTGTCAGGGATGAAATACTTTGAGCATGAGTTGCCCATTGATCCCTCCAGCATGACCCGGTGGCGCAAACGGGTGGGAGAAGCAGGCGCGGAGGA
GCTTTTGAAGGAGACGATCCAGACGGGCCTGGAGCTTGGGGCGGTCAAGTGGTTCCAGCTAAACCGGATCAACGTGGACACGACGGTCCAGGAAAAGGAA
GTCCGTTTCCCCACGGACTCCCGGTTGTACGATCGCGCCAGGGAGCGCCTTGTCAAGGCGGCGAAGGCTCGTGGAATTGTCCTGCGCCAGAGCTACAAGC
GTTTGTCCAAGACCGAGGTTACCAAACAAGGACGCTACGCCCACGCCCGGCAGATGAAACGAGCGGCGCGCAGCACCCGCAAGCTGAAGACCTATCTTGG
GCGCGTCATCCGCGATATTGAGCGCAAGTGTCCTGATCCGGACCGGGAACTGCAGGACCTTTTGAGCGTAGCCAGGCATATCCACGCACGGAAGCAAAAG
GACAAGAACAAGGTGTACAGCGTCCATGCCCCGGAGGTGGAGTGCATCAGCAAGGGCAAGGCCCACAAGCGTTACGAGTTTGGCTGCAAGGTGAGCGTGG
CTGCCACCAGCAAGGGCGGATGGTTTGTGGGGGCCATGGCCTTGCACGGGAATCCCTATGACGGACACACTTTGAAAGGCGCCCTGGCCCAGGTGGAGCG
AATCGCCCGGCAACCTCAACATGCTTTTGTGGACATGGGCTATCGGGGCCACGGCTACGAGGGCGATGTCCAGGTCCATGTGGACAAGCGCCGACGAGGG
CGAACGCCGAAAAGCCTGTGGCGCTGGATGAAGCGCAGGGCGGCGGTTGAGCCAGCCATTGGCCATTTGAAACGGGAACATCGAATGGAGCGAAACCGGC
TTGCCGGAACAGAGGGCGACAAGTTCAACGCCATCCTGTCAGCCGCCGGAATGAACTTTCATAAGCTGCAAAAGTTCCTGGAGGAACTTTTGCGCCTTTA
TTTTTTTCGAATTATGGCGGCTCAATACATCCCGCTGTTGGCTGTAGCCAAGGAAAAATAGGCTTTTTCAGAATCGAC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1335 bp | 444 aa | 127 | 1461 | + | No |
Chemistry : DDE
ORF sequence :
MKPRQSPVKDQQQDLFKVELARIVDPNHPLVKLSKAVNWDRLDEVFGETYCPDNGRPGVSTRLMVSLHYLKYTEDQSDEQVLKKWAENPYWQVLSGMKYF
EHELPIDPSSMTRWRKRVGEAGAEELLKETIQTGLELGAVKWFQLNRINVDTTVQEKEVRFPTDSRLYDRARERLVKAAKARGIVLRQSYKRLSKTEVTK
QGRYAHARQMKRAARSTRKLKTYLGRVIRDIERKCPDPDRELQDLLSVARHIHARKQKDKNKVYSVHAPEVECISKGKAHKRYEFGCKVSVAATSKGGWF
VGAMALHGNPYDGHTLKGALAQVERIARQPQHAFVDMGYRGHGYEGDVQVHVDKRRRGRTPKSLWRWMKRRAAVEPAIGHLKREHRMERNRLAGTEGDKF
NAILSAAGMNFHKLQKFLEELLRLYFFRIMAAQYIPLLAVAKEK
EHELPIDPSSMTRWRKRVGEAGAEELLKETIQTGLELGAVKWFQLNRINVDTTVQEKEVRFPTDSRLYDRARERLVKAAKARGIVLRQSYKRLSKTEVTK
QGRYAHARQMKRAARSTRKLKTYLGRVIRDIERKCPDPDRELQDLLSVARHIHARKQKDKNKVYSVHAPEVECISKGKAHKRYEFGCKVSVAATSKGGWF
VGAMALHGNPYDGHTLKGALAQVERIARQPQHAFVDMGYRGHGYEGDVQVHVDKRRRGRTPKSLWRWMKRRAAVEPAIGHLKREHRMERNRLAGTEGDKF
NAILSAAGMNFHKLQKFLEELLRLYFFRIMAAQYIPLLAVAKEK
Blast result :
Comments
ISDal2 is 74% aa similar to ISOpb2.
References
1] ISfinder annotation (2010)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ovchinnikova,G., Wawrik,B. and Richardson,P. (2008) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ovchinnikova,G., Wawrik,B. and Richardson,P. (2008) Direct submission GenBank.