ISNtsp1
- Family IS5
- Group IS5
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_ACPG01000037 | ND | Nitrosomonas sp. | Nitrosomonas sp. AL212 |
DNA section
IS Length : 1497 bp
Ends
IR Length : 15/16
IRL : GTCCACCCTGAATAATCCATAACGATATGATTTTATGTAATGAGTAGATA
IRR : GTCCACCCTGAACAATTCTATTTTCAGGCATATGCGCCAGCAAGGCGATG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CCATTAATTA | TAAATACTTA | 0 |
DNA sequence
GTCCACCCTGAATAATCCATAACGATATGATTTTATGTAATGAGTAGATAAATTTGAGCGGTTAAATTCACCAGTTCTTGGTAAAATTGCAGCAATTTCC
TGCAAATTTAGCGAGAGTTACATGGGACCAAAACCGCGCACGCCAGAGAACAATGACTTATTTCGCCAACGGTTGGATGAACTGGTCAACCTGAGTCATC
CCTTGGTGCAACTGGCGCAGCACATTGACTGGTCAGTGTTCGAGGATGGCTGGGGCGGTTTTTTTCCATCACATCGCGGTCGCCCTGCGACCAGACCCCG
CTTGGTAGCTGGACTGCTGTATCTACAACACACTTTTGCGCTGTCTGACGAAGCAGTGGTGTGGGGATGGGTAGAAAACCCCTACTGGCAATTGTTCTGT
GGCGAAACCTGGTTCCAGCACCAGCCGCCGATAGATCCCAGCTCACTGACGCGATGGCGACAACGGATTGGTGCAGAAGGCATGGAATGGTTATTGGCTC
AGACTATTGAGGCGGCCGTGTCGGCCAAGGTAATCAAGCAGCATAGCCTGGATAAAGTCATTGTGGACAGCACCGTCCAGGAGAAGGCCATTGCTTATCC
GACCGACAGCAAACTGCTCAATAGGGGACGGCAACAACTGGTGCAACTGGTAGCAAAAGCTGGGATAACGCTACGCCAGAACTACAACCGCATTGCCCCG
AAGTTGGCCGGCCAAATTGCCCGTTACGCTCATGCCAAGCAATATCGGCGTATGCGTAGCCACTTAAAGAAGCTCAAGACGCTAGTTGGCCGCGTCTGGC
GTGACGTATTTCGCCAATTGGCCCAGGTACCGCAGCACCTCAAGCCCAAGGTTACCGATTTGCTGCAGAAAGTCGAGCGCCTGCTCAAGCAGCAACCGCA
AGACAGCCACAAACTCTACAGCTTGCATGCGCCGGAAGTGGAGTGCATCAGCAAAGGCAAGTCGGGCCAGCCCTATGAGTTTGGGGTAAAGGTGTCAGTG
ATGACAACGCACAAGGAGGGATTGGTGGTTGGCATGCGCAGCCAGCCGGGCAATCCTTACGATGGGCATACCTTACACCTGGCTTTGGAGCAGGCGGCAG
TCCTGACGCAGCAGCAACCTAAGGAAGTCTTCGTAGACTTGGGTTATCGCGGCGCAACTGTCCCGGCTGGGGTCAAGGTCTATCACCGCAAACTCAGGCG
CGGCATTACCGCGCGGCTGAAACGCGATATTCGGCGACGCAGCGCCATCGAACCGGTAATCGGGCATATGAAAAACGACGGTCGCCTTCGCAGAAACTGG
CTGCAAGGCACAGAAGGCGATGCCTTTCATGCCATCCTCTGCGGTTGCGGACACAACCTGCGGATGATTCTGAGGAAGCTGCGGCTTCTTCTCGTCTTGA
TTTTCCTACGCTTGGATTGGCCATCAATCAATGATGACAGAACTAATCATCGCCTTGCTGGCGCATATGCCTGAAAATAGAATTGTTCAGGGTGGAC
TGCAAATTTAGCGAGAGTTACATGGGACCAAAACCGCGCACGCCAGAGAACAATGACTTATTTCGCCAACGGTTGGATGAACTGGTCAACCTGAGTCATC
CCTTGGTGCAACTGGCGCAGCACATTGACTGGTCAGTGTTCGAGGATGGCTGGGGCGGTTTTTTTCCATCACATCGCGGTCGCCCTGCGACCAGACCCCG
CTTGGTAGCTGGACTGCTGTATCTACAACACACTTTTGCGCTGTCTGACGAAGCAGTGGTGTGGGGATGGGTAGAAAACCCCTACTGGCAATTGTTCTGT
GGCGAAACCTGGTTCCAGCACCAGCCGCCGATAGATCCCAGCTCACTGACGCGATGGCGACAACGGATTGGTGCAGAAGGCATGGAATGGTTATTGGCTC
AGACTATTGAGGCGGCCGTGTCGGCCAAGGTAATCAAGCAGCATAGCCTGGATAAAGTCATTGTGGACAGCACCGTCCAGGAGAAGGCCATTGCTTATCC
GACCGACAGCAAACTGCTCAATAGGGGACGGCAACAACTGGTGCAACTGGTAGCAAAAGCTGGGATAACGCTACGCCAGAACTACAACCGCATTGCCCCG
AAGTTGGCCGGCCAAATTGCCCGTTACGCTCATGCCAAGCAATATCGGCGTATGCGTAGCCACTTAAAGAAGCTCAAGACGCTAGTTGGCCGCGTCTGGC
GTGACGTATTTCGCCAATTGGCCCAGGTACCGCAGCACCTCAAGCCCAAGGTTACCGATTTGCTGCAGAAAGTCGAGCGCCTGCTCAAGCAGCAACCGCA
AGACAGCCACAAACTCTACAGCTTGCATGCGCCGGAAGTGGAGTGCATCAGCAAAGGCAAGTCGGGCCAGCCCTATGAGTTTGGGGTAAAGGTGTCAGTG
ATGACAACGCACAAGGAGGGATTGGTGGTTGGCATGCGCAGCCAGCCGGGCAATCCTTACGATGGGCATACCTTACACCTGGCTTTGGAGCAGGCGGCAG
TCCTGACGCAGCAGCAACCTAAGGAAGTCTTCGTAGACTTGGGTTATCGCGGCGCAACTGTCCCGGCTGGGGTCAAGGTCTATCACCGCAAACTCAGGCG
CGGCATTACCGCGCGGCTGAAACGCGATATTCGGCGACGCAGCGCCATCGAACCGGTAATCGGGCATATGAAAAACGACGGTCGCCTTCGCAGAAACTGG
CTGCAAGGCACAGAAGGCGATGCCTTTCATGCCATCCTCTGCGGTTGCGGACACAACCTGCGGATGATTCTGAGGAAGCTGCGGCTTCTTCTCGTCTTGA
TTTTCCTACGCTTGGATTGGCCATCAATCAATGATGACAGAACTAATCATCGCCTTGCTGGCGCATATGCCTGAAAATAGAATTGTTCAGGGTGGAC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1353 bp | 450 aa | 122 | 1474 | + | No |
Chemistry : DDE
ORF sequence :
MGPKPRTPENNDLFRQRLDELVNLSHPLVQLAQHIDWSVFEDGWGGFFPSHRGRPATRPRLVAGLLYLQHTFALSDEAVVWGWVENPYWQLFCGETWFQH
QPPIDPSSLTRWRQRIGAEGMEWLLAQTIEAAVSAKVIKQHSLDKVIVDSTVQEKAIAYPTDSKLLNRGRQQLVQLVAKAGITLRQNYNRIAPKLAGQIA
RYAHAKQYRRMRSHLKKLKTLVGRVWRDVFRQLAQVPQHLKPKVTDLLQKVERLLKQQPQDSHKLYSLHAPEVECISKGKSGQPYEFGVKVSVMTTHKEG
LVVGMRSQPGNPYDGHTLHLALEQAAVLTQQQPKEVFVDLGYRGATVPAGVKVYHRKLRRGITARLKRDIRRRSAIEPVIGHMKNDGRLRRNWLQGTEGD
AFHAILCGCGHNLRMILRKLRLLLVLIFLRLDWPSINDDRTNHRLAGAYA
QPPIDPSSLTRWRQRIGAEGMEWLLAQTIEAAVSAKVIKQHSLDKVIVDSTVQEKAIAYPTDSKLLNRGRQQLVQLVAKAGITLRQNYNRIAPKLAGQIA
RYAHAKQYRRMRSHLKKLKTLVGRVWRDVFRQLAQVPQHLKPKVTDLLQKVERLLKQQPQDSHKLYSLHAPEVECISKGKSGQPYEFGVKVSVMTTHKEG
LVVGMRSQPGNPYDGHTLHLALEQAAVLTQQQPKEVFVDLGYRGATVPAGVKVYHRKLRRGITARLKRDIRRRSAIEPVIGHMKNDGRLRRNWLQGTEGD
AFHAILCGCGHNLRMILRKLRLLLVLIFLRLDWPSINDDRTNHRLAGAYA
Blast result :
Comments
ISNtsp1 is 74% aa similar to ISRso9.
References
1] ISfinder annotation (2010)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Larimer,F., Land,M.L., Hauser,L. and Norton,J. (2009) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Larimer,F., Land,M.L., Hauser,L. and Norton,J. (2009) Direct submission GenBank.