ISNoc2
- Family IS5
- Group IS5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007484 | ND | Nitrosococcus oceani | Nitrosococcus oceani ATCC 19707 |
DNA section
IS Length : 1472 bp
Ends
IR Length : 16
IRL : GTCGGCGCTGAAGAAGTCATAAGGCCCTGAAAGTATTTAGGAATAAGGTA
IRR : GTCGGCGCTGAAAAAGCCGGTTCTCAGGCTGCACGAGGTGGAGCAAGTAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTTTCCAGCT | TAGATA | AATAGGCAAG | 6 |
DNA sequence
GTCGGCGCTGAAGAAGTCATAAGGCCCTGAAAGTATTTAGGAATAAGGTAATTTTGTAGAGAAGAAATTGCCAGCGAATGGTAAGATACGTATCCGAAGC
TGGCAATTTCGGAAGCTAAAATGAAGCCTCAAACGCCACCCGATTTACCCACCGATGATCTGTTTCGTCACCGCCTGGAAAACCTCATTGATACGCGCCA
TGAGCTGGCCAAACTCGCAGCGTTAATTGATTGGGAGTTCTTTGATGCACAGTGGGGTGAGGCATTTTGTGAGAACGGTCGTCCTGCCATCGCGACCCGA
TTGATTGCGGGTCTGCACTACTTGAAACACACCTACGGCTTGTCCGATGAACAGGTGGTGCAACGCTGGGCAGAGAATCCGTACTGGCAATACTTTTGTG
GTGAAAGGTATTTTCAACACGAGCTGCCATTGAACCCGAGTTCGTTGACACGTTGGCGTCAGCGTTTAGGTGACGAGGGTATGGAATCGTTACTGAGTGC
GACGATCGATGCAGCGATTGCGTCGAAGGCGGTGAAAGCACGAGATTTAAAGTGCGTTACGGTTGACACGACGGTGCAGGAGAAAGCGATTGCGTTCCCC
ACCGACTCGAAGCTGTACAACCGGGCCCGTGAGCGCCTGGTACGCTTGGCGAAAGCACACGGCGTACCGTTGCGCCAAAGCTACGTGCGCGTGGGCCCGC
GACTTTTGTTCAAGAACAACCGCTACGGTTATGCGCGACAGACACGCCGCATGCGCCGCACCGCCGCGAAGCTGAAGACCGTGCTGGGGCGGGTGGTTCG
GGACATTGAGCGCAAATTGCCGAAGCAATCGGCCTCGGTGCAAGCGGCCTTTGCAGAGTCGATGGCATTAACCAAACGATTGCTCGATCAACAACGTCAC
GATAAAAATAAACTCTACGCGCTGCACGCACCGGAGGTTGAGTGCATTGCCAAAGGCACGGCGCACAAGCGCTACGAGTTTGGTGTCAAGGTTAGTATCG
CCACCACCAACCGTTCCAACCTGGTGGTGGGCGCACAGTCACTGCCAGGCAGTCCCTACGATGGTCATACGCTGAAGAAAGCCTTGCACCAGGTTGAGCG
ATTAACCGGACAACGGCCCGAGCGTTGTTATGTGGATCTAGGTTATCGCGGTCACGATGTTGACGACGTCGACGTATTCAAAGCTCGACAAAAGCGTGGC
GTCACGCGCACTATCCGACGTGAGTTAAAACGACGTAACGCTATCGAGCCGATCATTGGTCACATGAAAAACGACGGCCTGTTGCATCGCAATTATCTCA
AAGGGGTCGAGGGCGATGCAATCAACGCCATCCTGTGCGGTGCCGGCCAGAATCTCCGGCTGATCCTCAGGTACCTGAGGATTTTTTGGCTCAAAATCCA
ACCGGCTTTTATACAATACCTGTTACTTGCTCCACCTCGTGCAGCCTGAGAACCGGCTTTTTCAGCGCCGAC
TGGCAATTTCGGAAGCTAAAATGAAGCCTCAAACGCCACCCGATTTACCCACCGATGATCTGTTTCGTCACCGCCTGGAAAACCTCATTGATACGCGCCA
TGAGCTGGCCAAACTCGCAGCGTTAATTGATTGGGAGTTCTTTGATGCACAGTGGGGTGAGGCATTTTGTGAGAACGGTCGTCCTGCCATCGCGACCCGA
TTGATTGCGGGTCTGCACTACTTGAAACACACCTACGGCTTGTCCGATGAACAGGTGGTGCAACGCTGGGCAGAGAATCCGTACTGGCAATACTTTTGTG
GTGAAAGGTATTTTCAACACGAGCTGCCATTGAACCCGAGTTCGTTGACACGTTGGCGTCAGCGTTTAGGTGACGAGGGTATGGAATCGTTACTGAGTGC
GACGATCGATGCAGCGATTGCGTCGAAGGCGGTGAAAGCACGAGATTTAAAGTGCGTTACGGTTGACACGACGGTGCAGGAGAAAGCGATTGCGTTCCCC
ACCGACTCGAAGCTGTACAACCGGGCCCGTGAGCGCCTGGTACGCTTGGCGAAAGCACACGGCGTACCGTTGCGCCAAAGCTACGTGCGCGTGGGCCCGC
GACTTTTGTTCAAGAACAACCGCTACGGTTATGCGCGACAGACACGCCGCATGCGCCGCACCGCCGCGAAGCTGAAGACCGTGCTGGGGCGGGTGGTTCG
GGACATTGAGCGCAAATTGCCGAAGCAATCGGCCTCGGTGCAAGCGGCCTTTGCAGAGTCGATGGCATTAACCAAACGATTGCTCGATCAACAACGTCAC
GATAAAAATAAACTCTACGCGCTGCACGCACCGGAGGTTGAGTGCATTGCCAAAGGCACGGCGCACAAGCGCTACGAGTTTGGTGTCAAGGTTAGTATCG
CCACCACCAACCGTTCCAACCTGGTGGTGGGCGCACAGTCACTGCCAGGCAGTCCCTACGATGGTCATACGCTGAAGAAAGCCTTGCACCAGGTTGAGCG
ATTAACCGGACAACGGCCCGAGCGTTGTTATGTGGATCTAGGTTATCGCGGTCACGATGTTGACGACGTCGACGTATTCAAAGCTCGACAAAAGCGTGGC
GTCACGCGCACTATCCGACGTGAGTTAAAACGACGTAACGCTATCGAGCCGATCATTGGTCACATGAAAAACGACGGCCTGTTGCATCGCAATTATCTCA
AAGGGGTCGAGGGCGATGCAATCAACGCCATCCTGTGCGGTGCCGGCCAGAATCTCCGGCTGATCCTCAGGTACCTGAGGATTTTTTGGCTCAAAATCCA
ACCGGCTTTTATACAATACCTGTTACTTGCTCCACCTCGTGCAGCCTGAGAACCGGCTTTTTCAGCGCCGAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1329 bp | 442 aa | 121 | 1449 | + | No |
Chemistry : DDE
ORF sequence :
MKPQTPPDLPTDDLFRHRLENLIDTRHELAKLAALIDWEFFDAQWGEAFCENGRPAIATRLIAGLHYLKHTYGLSDEQVVQRWAENPYWQYFCGERYFQH
ELPLNPSSLTRWRQRLGDEGMESLLSATIDAAIASKAVKARDLKCVTVDTTVQEKAIAFPTDSKLYNRARERLVRLAKAHGVPLRQSYVRVGPRLLFKNN
RYGYARQTRRMRRTAAKLKTVLGRVVRDIERKLPKQSASVQAAFAESMALTKRLLDQQRHDKNKLYALHAPEVECIAKGTAHKRYEFGVKVSIATTNRSN
LVVGAQSLPGSPYDGHTLKKALHQVERLTGQRPERCYVDLGYRGHDVDDVDVFKARQKRGVTRTIRRELKRRNAIEPIIGHMKNDGLLHRNYLKGVEGDA
INAILCGAGQNLRLILRYLRIFWLKIQPAFIQYLLLAPPRAA
ELPLNPSSLTRWRQRLGDEGMESLLSATIDAAIASKAVKARDLKCVTVDTTVQEKAIAFPTDSKLYNRARERLVRLAKAHGVPLRQSYVRVGPRLLFKNN
RYGYARQTRRMRRTAAKLKTVLGRVVRDIERKLPKQSASVQAAFAESMALTKRLLDQQRHDKNKLYALHAPEVECIAKGTAHKRYEFGVKVSIATTNRSN
LVVGAQSLPGSPYDGHTLKKALHQVERLTGQRPERCYVDLGYRGHDVDDVDVFKARQKRGVTRTIRRELKRRNAIEPIIGHMKNDGLLHRNYLKGVEGDA
INAILCGAGQNLRLILRYLRIFWLKIQPAFIQYLLLAPPRAA
Blast result :
Comments
ISNoc2 is 69% aa similar to ISRso9.
References
1] Isfinder annotation (2010)
2] Klotz,M.G., Arp,D.J., Chain,P.S., El-Sheikh,A.F., Hauser,L.J., Hommes,N.G., Larimer,F.W., Malfatti,S.A., Norton,J.M., Poret-Peterson,A.T., Vergez,L.M. and Ward,B.B. (2006) Appl. Environ. Microbiol. 72 (9), 6299-6315
2] Klotz,M.G., Arp,D.J., Chain,P.S., El-Sheikh,A.F., Hauser,L.J., Hommes,N.G., Larimer,F.W., Malfatti,S.A., Norton,J.M., Poret-Peterson,A.T., Vergez,L.M. and Ward,B.B. (2006) Appl. Environ. Microbiol. 72 (9), 6299-6315