ISNoc2

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007484 ND Nitrosococcus oceani
Nitrosococcus oceani ATCC 19707
DNA section
IS Length : 1472 bp

Ends


IR Length : 16

IRL : GTCGGCGCTGAAGAAGTCATAAGGCCCTGAAAGTATTTAGGAATAAGGTA
IRR : GTCGGCGCTGAAAAAGCCGGTTCTCAGGCTGCACGAGGTGGAGCAAGTAA

Insertion site


Left flankDirect repeatRight flankDR Length
GTTTCCAGCTTAGATAAATAGGCAAG6

DNA sequence

GTCGGCGCTGAAGAAGTCATAAGGCCCTGAAAGTATTTAGGAATAAGGTAATTTTGTAGAGAAGAAATTGCCAGCGAATGGTAAGATACGTATCCGAAGC
TGGCAATTTCGGAAGCTAAAATGAAGCCTCAAACGCCACCCGATTTACCCACCGATGATCTGTTTCGTCACCGCCTGGAAAACCTCATTGATACGCGCCA
TGAGCTGGCCAAACTCGCAGCGTTAATTGATTGGGAGTTCTTTGATGCACAGTGGGGTGAGGCATTTTGTGAGAACGGTCGTCCTGCCATCGCGACCCGA
TTGATTGCGGGTCTGCACTACTTGAAACACACCTACGGCTTGTCCGATGAACAGGTGGTGCAACGCTGGGCAGAGAATCCGTACTGGCAATACTTTTGTG
GTGAAAGGTATTTTCAACACGAGCTGCCATTGAACCCGAGTTCGTTGACACGTTGGCGTCAGCGTTTAGGTGACGAGGGTATGGAATCGTTACTGAGTGC
GACGATCGATGCAGCGATTGCGTCGAAGGCGGTGAAAGCACGAGATTTAAAGTGCGTTACGGTTGACACGACGGTGCAGGAGAAAGCGATTGCGTTCCCC
ACCGACTCGAAGCTGTACAACCGGGCCCGTGAGCGCCTGGTACGCTTGGCGAAAGCACACGGCGTACCGTTGCGCCAAAGCTACGTGCGCGTGGGCCCGC
GACTTTTGTTCAAGAACAACCGCTACGGTTATGCGCGACAGACACGCCGCATGCGCCGCACCGCCGCGAAGCTGAAGACCGTGCTGGGGCGGGTGGTTCG
GGACATTGAGCGCAAATTGCCGAAGCAATCGGCCTCGGTGCAAGCGGCCTTTGCAGAGTCGATGGCATTAACCAAACGATTGCTCGATCAACAACGTCAC
GATAAAAATAAACTCTACGCGCTGCACGCACCGGAGGTTGAGTGCATTGCCAAAGGCACGGCGCACAAGCGCTACGAGTTTGGTGTCAAGGTTAGTATCG
CCACCACCAACCGTTCCAACCTGGTGGTGGGCGCACAGTCACTGCCAGGCAGTCCCTACGATGGTCATACGCTGAAGAAAGCCTTGCACCAGGTTGAGCG
ATTAACCGGACAACGGCCCGAGCGTTGTTATGTGGATCTAGGTTATCGCGGTCACGATGTTGACGACGTCGACGTATTCAAAGCTCGACAAAAGCGTGGC
GTCACGCGCACTATCCGACGTGAGTTAAAACGACGTAACGCTATCGAGCCGATCATTGGTCACATGAAAAACGACGGCCTGTTGCATCGCAATTATCTCA
AAGGGGTCGAGGGCGATGCAATCAACGCCATCCTGTGCGGTGCCGGCCAGAATCTCCGGCTGATCCTCAGGTACCTGAGGATTTTTTGGCTCAAAATCCA
ACCGGCTTTTATACAATACCTGTTACTTGCTCCACCTCGTGCAGCCTGAGAACCGGCTTTTTCAGCGCCGAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1329 bp442 aa1211449+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKPQTPPDLPTDDLFRHRLENLIDTRHELAKLAALIDWEFFDAQWGEAFCENGRPAIATRLIAGLHYLKHTYGLSDEQVVQRWAENPYWQYFCGERYFQH
ELPLNPSSLTRWRQRLGDEGMESLLSATIDAAIASKAVKARDLKCVTVDTTVQEKAIAFPTDSKLYNRARERLVRLAKAHGVPLRQSYVRVGPRLLFKNN
RYGYARQTRRMRRTAAKLKTVLGRVVRDIERKLPKQSASVQAAFAESMALTKRLLDQQRHDKNKLYALHAPEVECIAKGTAHKRYEFGVKVSIATTNRSN
LVVGAQSLPGSPYDGHTLKKALHQVERLTGQRPERCYVDLGYRGHDVDDVDVFKARQKRGVTRTIRRELKRRNAIEPIIGHMKNDGLLHRNYLKGVEGDA
INAILCGAGQNLRLILRYLRIFWLKIQPAFIQYLLLAPPRAA

 

Blast result :
Comments
ISNoc2 is 69% aa similar to ISRso9.
References
1] Isfinder annotation (2010)
2] Klotz,M.G., Arp,D.J., Chain,P.S., El-Sheikh,A.F., Hauser,L.J., Hommes,N.G., Larimer,F.W., Malfatti,S.A., Norton,J.M., Poret-Peterson,A.T., Vergez,L.M. and Ward,B.B. (2006) Appl. Environ. Microbiol. 72 (9), 6299-6315