ISNha6
- Family IS5
- Group IS5
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_007964 | ND | Nitrobacter hamburgensis | Nitrobacter hamburgensis X14 |
DNA section
IS Length : 1547 bp
Ends
IR Length : 17/21
IRL : GTCGCCCGTGAAAAATGCAGAAGCCGTTCTGGCGGAATGATTTCGCGGGT
IRR : GTCGTCCGTGAAGAACGAGATTTCATGAGACCGAGAATGATTGATGGTTG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AAGACCGCCA | TAGCTA | ACCGAGCCGC | 6 |
DNA sequence
GTCGCCCGTGAAAAATGCAGAAGCCGTTCTGGCGGAATGATTTCGCGGGTTTTGCAAGTATTCGATATCGCCGGTTTTGGGGATGTCGATATCGATTTCC
TTGCAATTTGATTTGGCGGAATCGGCGTGATTCCATGTCTCCGGCTGGGTTTGAGTCGGAGATATCGCGATGCTTCCGAAGGAGCGGCGAGACAGCGGAC
AGAATGATTTGTTCAAGTCGCACCTCGACCAGATCGTCGACATGAACCACGCGTTGGCGAAGCTGGCGCGCCAGATCGACTGGGGATTTCTCGAGGGCAA
ATTCGGGGCGGTCTACGCCGATGTTCCCGGCCGGCCGCCGCTGCCGACGCGGCTGATGGCGGGGTTGGCGATCCTCAAGCACACGTTCAATCTGTCGGAC
GAGGCGCTGTGCGAACGCTGGGTCGAAAACCCCTATTATCAATTGTTTTGTGGCGAGGCGTTCTTTCGTCACGACGTTCCCTTCGACCGCTCCTCGATGA
CGCGCTGGCGTCAGCGCATGGGCGAAGACAAGATCGTCGCGCTCATTCAGGAGAGCCTGAATGTCGCCACGCGCGTTGGCGCGGCCAAGCCGTCGGACTT
CACCAGCATCATCGTCGATACGACGGTGCAGCCGAAGGCGGTGGCGTTCCCGACCGATGCCAAACTCATGCATCGCGCCCGCGAGAAGCTGGCGCGGTTG
GCCAAAAAGCACGGCGTCGTCCTGCGGCAATCCTACGAGCGTGTTGGCAAGCACGCGTTGATCGCGCATCAGCGCTACGCTCACGCGAAACAGTTCAGGC
GCGCCAACCGGGCGCTGAAGACATTGCGCACGTATCTCGGCCGCGTGATGCGCGACATCAGGCGCAAGATCGCCGGCGATCCGGACAGGCAGGCGGCTTT
CGCGCAACTGTTGTCGCTGGCCCACGCGGTGCGTCATCAACAACAAAGGCAGCGCGGCAAGAAAATCTATTCCCTGCACGCGCCGGAGATCGAATGCATC
GCCAAGGGCAAATCGCACAAGCCCTATGAGTTCGGCGTGAAAGTCTCCATCGCCACGACGCTCAACCATTCCAGGGGCGGCCAGTTCATTGCGCACGCGA
AGGCGCTTCCGGGAAATCCCTACGACGGCCACACGCTGGAAGGCATCATCCCCGATGTCGAGCATCAAATCGGCGCGACCATCAATCGGCTCGTCGCCGA
CAAGGGCTATAGGGGCCACAATGCTCCGCCAGAATACAAGTTCAGGATTTACATCTCGGGCCAGAAACGCGGCGTCACCGACCCGATCAAGCGTGACCTG
CGACGACGTTCGGCGATCGAGCCTGTGATCGGTCACGCAAAATCAGACCACCGCATGGACCGCAATTATCTCAAGGGCTCCGAAGGCGACGCCATCAACG
CCGTGCTCGCCGCCGCCGGGTACAACTTCCGCCGATTGCTCGCCTGGCTGAGGCTGCTTTTGCGCGCATGGTTAGTGTCGATCATGCGGCCACATGCCAA
CCATCAATCATTCTCGGTCTCATGAAATCTCGTTCTTCACGGACGAC
TTGCAATTTGATTTGGCGGAATCGGCGTGATTCCATGTCTCCGGCTGGGTTTGAGTCGGAGATATCGCGATGCTTCCGAAGGAGCGGCGAGACAGCGGAC
AGAATGATTTGTTCAAGTCGCACCTCGACCAGATCGTCGACATGAACCACGCGTTGGCGAAGCTGGCGCGCCAGATCGACTGGGGATTTCTCGAGGGCAA
ATTCGGGGCGGTCTACGCCGATGTTCCCGGCCGGCCGCCGCTGCCGACGCGGCTGATGGCGGGGTTGGCGATCCTCAAGCACACGTTCAATCTGTCGGAC
GAGGCGCTGTGCGAACGCTGGGTCGAAAACCCCTATTATCAATTGTTTTGTGGCGAGGCGTTCTTTCGTCACGACGTTCCCTTCGACCGCTCCTCGATGA
CGCGCTGGCGTCAGCGCATGGGCGAAGACAAGATCGTCGCGCTCATTCAGGAGAGCCTGAATGTCGCCACGCGCGTTGGCGCGGCCAAGCCGTCGGACTT
CACCAGCATCATCGTCGATACGACGGTGCAGCCGAAGGCGGTGGCGTTCCCGACCGATGCCAAACTCATGCATCGCGCCCGCGAGAAGCTGGCGCGGTTG
GCCAAAAAGCACGGCGTCGTCCTGCGGCAATCCTACGAGCGTGTTGGCAAGCACGCGTTGATCGCGCATCAGCGCTACGCTCACGCGAAACAGTTCAGGC
GCGCCAACCGGGCGCTGAAGACATTGCGCACGTATCTCGGCCGCGTGATGCGCGACATCAGGCGCAAGATCGCCGGCGATCCGGACAGGCAGGCGGCTTT
CGCGCAACTGTTGTCGCTGGCCCACGCGGTGCGTCATCAACAACAAAGGCAGCGCGGCAAGAAAATCTATTCCCTGCACGCGCCGGAGATCGAATGCATC
GCCAAGGGCAAATCGCACAAGCCCTATGAGTTCGGCGTGAAAGTCTCCATCGCCACGACGCTCAACCATTCCAGGGGCGGCCAGTTCATTGCGCACGCGA
AGGCGCTTCCGGGAAATCCCTACGACGGCCACACGCTGGAAGGCATCATCCCCGATGTCGAGCATCAAATCGGCGCGACCATCAATCGGCTCGTCGCCGA
CAAGGGCTATAGGGGCCACAATGCTCCGCCAGAATACAAGTTCAGGATTTACATCTCGGGCCAGAAACGCGGCGTCACCGACCCGATCAAGCGTGACCTG
CGACGACGTTCGGCGATCGAGCCTGTGATCGGTCACGCAAAATCAGACCACCGCATGGACCGCAATTATCTCAAGGGCTCCGAAGGCGACGCCATCAACG
CCGTGCTCGCCGCCGCCGGGTACAACTTCCGCCGATTGCTCGCCTGGCTGAGGCTGCTTTTGCGCGCATGGTTAGTGTCGATCATGCGGCCACATGCCAA
CCATCAATCATTCTCGGTCTCATGAAATCTCGTTCTTCACGGACGAC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1356 bp | 451 aa | 170 | 1525 | + | No |
Chemistry : DDE
ORF sequence :
MLPKERRDSGQNDLFKSHLDQIVDMNHALAKLARQIDWGFLEGKFGAVYADVPGRPPLPTRLMAGLAILKHTFNLSDEALCERWVENPYYQLFCGEAFFR
HDVPFDRSSMTRWRQRMGEDKIVALIQESLNVATRVGAAKPSDFTSIIVDTTVQPKAVAFPTDAKLMHRAREKLARLAKKHGVVLRQSYERVGKHALIAH
QRYAHAKQFRRANRALKTLRTYLGRVMRDIRRKIAGDPDRQAAFAQLLSLAHAVRHQQQRQRGKKIYSLHAPEIECIAKGKSHKPYEFGVKVSIATTLNH
SRGGQFIAHAKALPGNPYDGHTLEGIIPDVEHQIGATINRLVADKGYRGHNAPPEYKFRIYISGQKRGVTDPIKRDLRRRSAIEPVIGHAKSDHRMDRNY
LKGSEGDAINAVLAAAGYNFRRLLAWLRLLLRAWLVSIMRPHANHQSFSVS
HDVPFDRSSMTRWRQRMGEDKIVALIQESLNVATRVGAAKPSDFTSIIVDTTVQPKAVAFPTDAKLMHRAREKLARLAKKHGVVLRQSYERVGKHALIAH
QRYAHAKQFRRANRALKTLRTYLGRVMRDIRRKIAGDPDRQAAFAQLLSLAHAVRHQQQRQRGKKIYSLHAPEIECIAKGKSHKPYEFGVKVSIATTLNH
SRGGQFIAHAKALPGNPYDGHTLEGIIPDVEHQIGATINRLVADKGYRGHNAPPEYKFRIYISGQKRGVTDPIKRDLRRRSAIEPVIGHAKSDHRMDRNY
LKGSEGDAINAVLAAAGYNFRRLLAWLRLLLRAWLVSIMRPHANHQSFSVS
Blast result :
Comments
ISNha6 is 79% aa similar to ISRm13.
References
1] Isfinder annotation (2010)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Ward,B., Arp,D., Klotz,M., Stein,L., O'Mullan,G., Starkenburg,S., Sayavedra,L., Poret-Peterson,A.T., Gentry,M.E., Bruce,D. and Richardson,P. 2006) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Ward,B., Arp,D., Klotz,M., Stein,L., O'Mullan,G., Starkenburg,S., Sayavedra,L., Poret-Peterson,A.T., Gentry,M.E., Bruce,D. and Richardson,P. 2006) Direct submission GenBank.