ISPta1
- Family IS5
- Group IS5
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_ACIJ02000028 | ND | Prevotella tannerae | Prevotella melaninogenica ATCC 25845 Prevotella tannerae ATCC 51259 |
DNA section
IS Length : 1428 bp
Ends
IR Length : 20/28
IRL : GTCCACCCTTAAAAACCTAACATTCTGCTGATTCACAGTATATTATACTA
IRR : GTCATTCCTTAAAAACTATATTTCAGCATAAAGCCTGTACTAACAAGCTC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GTTTTATTTG | TATATA | GGTTCAGAAC | 6 |
| AGGATTCGCA | TAATTA | GCAAAATTCG | 6 |
DNA sequence
GTCCACCCTTAAAAACCTAACATTCTGCTGATTCACAGTATATTATACTACAAATCATTTGCTTATATCTACAAGTTTTTGTACCTTTACATTATAAATC
TTGCAGATATTTATGCTTAAACGTACATCCAAACAGCTCTCTATGTTCTCTTCTTTAGAGGACATGCTTAGTCATCAACACCCCCTTTTTCAACTTAGTA
ATAAGATTAATTGGGAGTGTTTTGAAAATGCTTTTTCTCCATTGTATTGCAGTACTAACGGGCGCCCAGCTCATCCTATTCGCTTGATGTGTGGTCTTTT
AATCTTAAAACATTTGCGTAATGTTTCAGATGAAATGGTGGTTTCTCAATGGAGTGAGAATGCTTACTGTCAATATTTTTGTGGTGGACTTGAATTTATG
CCAAAACAACCTTGTGACGCTTCTGAGTTAGTTCACTTCAGAAATCGTATAGGTGAGGAAGGTATGGAGTTAATATTAGCAGAGAGCATCCGTGTTAATA
CCGACCATGATGACGAAGATCATTTTGATACGGCTTTCATTGATTCTACCGTGCAGGAGAAGAATATAACCTATCCAACAGATGCGAAGTTGCATAAAAA
GATAATCAAAAACGTTCTGAAGATAGTTCATGACAAGTGTCTTCCTCTACGACAAAGTTATACGCGTACGTTGAAAGGGATTTACCGTTCCCAACGTTTT
CGTAATCATCCCAAGAATCGTAAGAAAGCTCTTAAGGCAGATAGGCAACTAAGGACCATAGCAGGAAGATTAGTAAGAGAGTTAGAGCGTAATCTTGAGG
GAAAGAAAGGATATGAGAAGATGTTTGAGCTATATTATAGAGTCCTTTCTCAGAATCGAAAGTCAAAGAACAAAGTATATTCTCTGCACGAACCAGATGT
GGTTTGCCTCAGCAAAGGTAAGGAACATAAGCAATATGAGTTTGGTAATAAAGTATCTATTCTTCGCTCATGGTCAGGACTTATTTTGGGTGCATGTTCT
TTTAGGAATGAATATGATGGGCATACTATCGAAAAGACGTTGGAACAAACCCAAAGAATGACAGGAAAGCAGGTTGATAAGTTAGCAGGAGATAGAGGGT
ATAGAGGTGTAAAGCAGATTGGGCAGACAAAGATACTCATTCCAGACACTCCTAAAGCTAAAGATAGCTACTACCAAAAGAAAAAGAAACACAAACTATT
TTGTAAACGAGCTGGTATAGAGCCAACCATAGGACATCTTAAAGCAGACCACCGATTATCTCGCAACTTTTATAAAGGTGTGAAAGGAGATGCTATCAAT
GTCTTATTAGCGGCGGCAGCATATAACTTCAAAAGAGCTATGAGAGTTCTTTTGGACCTTATAAAAAGAATCAGCATAGAGCTTGTTAGTACAGGCTTTA
TGCTGAAATATAGTTTTTAAGGAATGAC
TTGCAGATATTTATGCTTAAACGTACATCCAAACAGCTCTCTATGTTCTCTTCTTTAGAGGACATGCTTAGTCATCAACACCCCCTTTTTCAACTTAGTA
ATAAGATTAATTGGGAGTGTTTTGAAAATGCTTTTTCTCCATTGTATTGCAGTACTAACGGGCGCCCAGCTCATCCTATTCGCTTGATGTGTGGTCTTTT
AATCTTAAAACATTTGCGTAATGTTTCAGATGAAATGGTGGTTTCTCAATGGAGTGAGAATGCTTACTGTCAATATTTTTGTGGTGGACTTGAATTTATG
CCAAAACAACCTTGTGACGCTTCTGAGTTAGTTCACTTCAGAAATCGTATAGGTGAGGAAGGTATGGAGTTAATATTAGCAGAGAGCATCCGTGTTAATA
CCGACCATGATGACGAAGATCATTTTGATACGGCTTTCATTGATTCTACCGTGCAGGAGAAGAATATAACCTATCCAACAGATGCGAAGTTGCATAAAAA
GATAATCAAAAACGTTCTGAAGATAGTTCATGACAAGTGTCTTCCTCTACGACAAAGTTATACGCGTACGTTGAAAGGGATTTACCGTTCCCAACGTTTT
CGTAATCATCCCAAGAATCGTAAGAAAGCTCTTAAGGCAGATAGGCAACTAAGGACCATAGCAGGAAGATTAGTAAGAGAGTTAGAGCGTAATCTTGAGG
GAAAGAAAGGATATGAGAAGATGTTTGAGCTATATTATAGAGTCCTTTCTCAGAATCGAAAGTCAAAGAACAAAGTATATTCTCTGCACGAACCAGATGT
GGTTTGCCTCAGCAAAGGTAAGGAACATAAGCAATATGAGTTTGGTAATAAAGTATCTATTCTTCGCTCATGGTCAGGACTTATTTTGGGTGCATGTTCT
TTTAGGAATGAATATGATGGGCATACTATCGAAAAGACGTTGGAACAAACCCAAAGAATGACAGGAAAGCAGGTTGATAAGTTAGCAGGAGATAGAGGGT
ATAGAGGTGTAAAGCAGATTGGGCAGACAAAGATACTCATTCCAGACACTCCTAAAGCTAAAGATAGCTACTACCAAAAGAAAAAGAAACACAAACTATT
TTGTAAACGAGCTGGTATAGAGCCAACCATAGGACATCTTAAAGCAGACCACCGATTATCTCGCAACTTTTATAAAGGTGTGAAAGGAGATGCTATCAAT
GTCTTATTAGCGGCGGCAGCATATAACTTCAAAAGAGCTATGAGAGTTCTTTTGGACCTTATAAAAAGAATCAGCATAGAGCTTGTTAGTACAGGCTTTA
TGCTGAAATATAGTTTTTAAGGAATGAC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1308 bp | 435 aa | 113 | 1420 | + | No |
Chemistry : DDE
ORF sequence :
MLKRTSKQLSMFSSLEDMLSHQHPLFQLSNKINWECFENAFSPLYCSTNGRPAHPIRLMCGLLILKHLRNVSDEMVVSQWSENAYCQYFCGGLEFMPKQP
CDASELVHFRNRIGEEGMELILAESIRVNTDHDDEDHFDTAFIDSTVQEKNITYPTDAKLHKKIIKNVLKIVHDKCLPLRQSYTRTLKGIYRSQRFRNHP
KNRKKALKADRQLRTIAGRLVRELERNLEGKKGYEKMFELYYRVLSQNRKSKNKVYSLHEPDVVCLSKGKEHKQYEFGNKVSILRSWSGLILGACSFRNE
YDGHTIEKTLEQTQRMTGKQVDKLAGDRGYRGVKQIGQTKILIPDTPKAKDSYYQKKKKHKLFCKRAGIEPTIGHLKADHRLSRNFYKGVKGDAINVLLA
AAAYNFKRAMRVLLDLIKRISIELVSTGFMLKYSF
CDASELVHFRNRIGEEGMELILAESIRVNTDHDDEDHFDTAFIDSTVQEKNITYPTDAKLHKKIIKNVLKIVHDKCLPLRQSYTRTLKGIYRSQRFRNHP
KNRKKALKADRQLRTIAGRLVRELERNLEGKKGYEKMFELYYRVLSQNRKSKNKVYSLHEPDVVCLSKGKEHKQYEFGNKVSILRSWSGLILGACSFRNE
YDGHTIEKTLEQTQRMTGKQVDKLAGDRGYRGVKQIGQTKILIPDTPKAKDSYYQKKKKHKLFCKRAGIEPTIGHLKADHRLSRNFYKGVKGDAINVLLA
AAAYNFKRAMRVLLDLIKRISIELVSTGFMLKYSF
Blast result :
Comments
ISPta1 is 80% aa similar to ISPg7.
References
1] ISfinder annotation (2010)
2] Weinstock,G., Sodergren,E., Clifton,S., Fulton,L., Fulton,B., Courtney,L., Fronick,C., Harrison,M., Strong,C., Farmer,C., Delahaunty,K., Markovic,C., Hall,O., Minx,P., Tomlinson,C., Mitreva,M., Nelson,J., Hou,S., Wollam,A., Pepin,K.H., Johnson,M., Bhonagiri,V., Nash,W.E., Warren,W., Chinwalla,A., Mardis,E.R. and Wilson,R.K. (2009) Direct submission GenBank.
2] Weinstock,G., Sodergren,E., Clifton,S., Fulton,L., Fulton,B., Courtney,L., Fronick,C., Harrison,M., Strong,C., Farmer,C., Delahaunty,K., Markovic,C., Hall,O., Minx,P., Tomlinson,C., Mitreva,M., Nelson,J., Hou,S., Wollam,A., Pepin,K.H., Johnson,M., Bhonagiri,V., Nash,W.E., Warren,W., Chinwalla,A., Mardis,E.R. and Wilson,R.K. (2009) Direct submission GenBank.