ISStsp1
- Family ISAzo13
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_ABJF01000012 | ND | Streptomyces sp. | Streptomyces sp. Mg1 |
DNA section
IS Length : 1694 bp
Ends
IR Length : 19/23
IRL : GGGATTGCAGATCATCAAGGTGTTGCTTCCTGACCTGGGGCTCGTTGGTC
IRR : GGGATTGCAGATCATTAACACGTCGTCTTGATCTTGTTGTCCTCGCTGGT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CAAATGAAACGACGTCTAA | TTAGGCAGTTGACGATC | 0 |
DNA sequence
GGGATTGCAGATCATCAAGGTGTTGCTTCCTGACCTGGGGCTCGTTGGTCTGGTATGCGCATCCCGGACGAGACCCGTGACCAACTCTCCGCGAAGTTCG
CGGTGTTGTTCCCGCATCTGGACGAGCGGCAGCGACGGCTGTTGATGGGGGCCGAGGCCCGGCTGCTGGGGCATGGTGGCATCCGCGCTGTCGCTCGGGC
GGCCCAGGTCAGTGAGACGACGGTCCGCGATGGCGTGTTCGAGCTGGAATCCGGCGACGAGCCGTTGGGGCGGGTCCGGCGTCCCGGCGGAGGACGCAAA
CGGGTCGCCGATCTGGACCCGGGGCTGCGGCCGGCACTGCTGGCGCTGGTCGAGCCCGATGAGAGAGGCGACCCGATGTCGCCGCTGCGGTGGACTGTGA
AATCGACCCGTACGATCGCGGCGGAGCTGGCCCGGGCCGGGCACCGGATCAGCGCCGACACCGTGGGCGACCTGCTGCGGGAGGAAGGCTTCAGCCTGCA
GGCCAACGCGAAGACGCTCGAGGGTAACCAGCATCCGGACCGGGACACCCAGTTCCGTTACCTCAACGAGCAGGCCCGCAACCACCGGGACGCCGGCCAG
CCGGTCATCAGCGTGGACACCAAGAAGAAGGAACTCGTCGGCGACTTCAAGAACAGCGGCCGCCAGTGGCGTCCCGCCGGCGAGCCCGTCCCGGTCAGCG
TCCACGACTTCGCCGACCCGCAGCTGGGCAAGGCCGTCCCCTACGGGATCTACGATCTGACCGCGAACACCGGCTGGGTCAACGTCGGCACCGATCACGA
CACCGCCGCGTTCGCCGTGGAATCGATCCGCCGCTGGTGGCACGGCCAGGGCCAGGCTGCCTACCCGCGAGCGACACGGCTCCTGATCACCGCCGACGCC
GGCGGATCCAACGGCTACCGCACCCGGGCATGGAAGCTCGAGCTGGCTCAACTCGCCGCTGAAACCGGGCTGACGATCACTGTGTGCCACCTACCACCGG
GCACTTCGAAGTGGAACAAGATCGAGCACCGGCTGTTCTCGCACATCACCATGAACTGGAGCGGCCGCCCGCTGACCAGCCACGAAGTCATCGTGCAGTC
GATCGCCGCGACCACCACCCGCACCGGACTGCGCGTGAGGGCCGAACTCGACACCAACACCTACCCGACCGGAGTCCGTATCAAAGACGCGGAGATGGCC
GCCCTGCCGCTGACCCGGCACGCGTTCCAGGGCGCCTGGAACTATGCACTGCACCCCCAGCCATCACCTGTAATCCCGGCGGCCCGGGCCCCGCAGACGC
CGGATCCGGAGTGGAACCAGGCCTTGCTCTCTGATCCCGCACTGACCGGGATGACCCTCCAGCAACTGAACGACCTCACCGAGACCCTGGCCCCGGACGG
GGATATCCGGCGCGGCCGCCCGCCCCGGCTGGCCTTCCCCGACCAGGTCCTGGCCACCGTGCTCCACCTACGGGCCGCCCTGGCCGCGGAACCCCTCGCC
GTGCTGTTCGGCACGAGCCGCACCGCAATGCACCGCACGCTCTTGAAGAACCGGCGACTGCTCGAGACACACAGCATCACCATCCCACCGGCGACAACCC
CACCCACGGCCCTCGCCGCCCTTCAGGCCCGGGTCCAGGCACAGACCAGCGAGGACAACAAGATCAAGACGACGTGTTAATGATCTGCAATCCC
CGGTGTTGTTCCCGCATCTGGACGAGCGGCAGCGACGGCTGTTGATGGGGGCCGAGGCCCGGCTGCTGGGGCATGGTGGCATCCGCGCTGTCGCTCGGGC
GGCCCAGGTCAGTGAGACGACGGTCCGCGATGGCGTGTTCGAGCTGGAATCCGGCGACGAGCCGTTGGGGCGGGTCCGGCGTCCCGGCGGAGGACGCAAA
CGGGTCGCCGATCTGGACCCGGGGCTGCGGCCGGCACTGCTGGCGCTGGTCGAGCCCGATGAGAGAGGCGACCCGATGTCGCCGCTGCGGTGGACTGTGA
AATCGACCCGTACGATCGCGGCGGAGCTGGCCCGGGCCGGGCACCGGATCAGCGCCGACACCGTGGGCGACCTGCTGCGGGAGGAAGGCTTCAGCCTGCA
GGCCAACGCGAAGACGCTCGAGGGTAACCAGCATCCGGACCGGGACACCCAGTTCCGTTACCTCAACGAGCAGGCCCGCAACCACCGGGACGCCGGCCAG
CCGGTCATCAGCGTGGACACCAAGAAGAAGGAACTCGTCGGCGACTTCAAGAACAGCGGCCGCCAGTGGCGTCCCGCCGGCGAGCCCGTCCCGGTCAGCG
TCCACGACTTCGCCGACCCGCAGCTGGGCAAGGCCGTCCCCTACGGGATCTACGATCTGACCGCGAACACCGGCTGGGTCAACGTCGGCACCGATCACGA
CACCGCCGCGTTCGCCGTGGAATCGATCCGCCGCTGGTGGCACGGCCAGGGCCAGGCTGCCTACCCGCGAGCGACACGGCTCCTGATCACCGCCGACGCC
GGCGGATCCAACGGCTACCGCACCCGGGCATGGAAGCTCGAGCTGGCTCAACTCGCCGCTGAAACCGGGCTGACGATCACTGTGTGCCACCTACCACCGG
GCACTTCGAAGTGGAACAAGATCGAGCACCGGCTGTTCTCGCACATCACCATGAACTGGAGCGGCCGCCCGCTGACCAGCCACGAAGTCATCGTGCAGTC
GATCGCCGCGACCACCACCCGCACCGGACTGCGCGTGAGGGCCGAACTCGACACCAACACCTACCCGACCGGAGTCCGTATCAAAGACGCGGAGATGGCC
GCCCTGCCGCTGACCCGGCACGCGTTCCAGGGCGCCTGGAACTATGCACTGCACCCCCAGCCATCACCTGTAATCCCGGCGGCCCGGGCCCCGCAGACGC
CGGATCCGGAGTGGAACCAGGCCTTGCTCTCTGATCCCGCACTGACCGGGATGACCCTCCAGCAACTGAACGACCTCACCGAGACCCTGGCCCCGGACGG
GGATATCCGGCGCGGCCGCCCGCCCCGGCTGGCCTTCCCCGACCAGGTCCTGGCCACCGTGCTCCACCTACGGGCCGCCCTGGCCGCGGAACCCCTCGCC
GTGCTGTTCGGCACGAGCCGCACCGCAATGCACCGCACGCTCTTGAAGAACCGGCGACTGCTCGAGACACACAGCATCACCATCCCACCGGCGACAACCC
CACCCACGGCCCTCGCCGCCCTTCAGGCCCGGGTCCAGGCACAGACCAGCGAGGACAACAAGATCAAGACGACGTGTTAATGATCTGCAATCCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1626 bp | 541 aa | 55 | 1680 | + | No |
Chemistry : Unknow
ORF sequence :
MRIPDETRDQLSAKFAVLFPHLDERQRRLLMGAEARLLGHGGIRAVARAAQVSETTVRDGVFELESGDEPLGRVRRPGGGRKRVADLDPGLRPALLALVE
PDERGDPMSPLRWTVKSTRTIAAELARAGHRISADTVGDLLREEGFSLQANAKTLEGNQHPDRDTQFRYLNEQARNHRDAGQPVISVDTKKKELVGDFKN
SGRQWRPAGEPVPVSVHDFADPQLGKAVPYGIYDLTANTGWVNVGTDHDTAAFAVESIRRWWHGQGQAAYPRATRLLITADAGGSNGYRTRAWKLELAQL
AAETGLTITVCHLPPGTSKWNKIEHRLFSHITMNWSGRPLTSHEVIVQSIAATTTRTGLRVRAELDTNTYPTGVRIKDAEMAALPLTRHAFQGAWNYALH
PQPSPVIPAARAPQTPDPEWNQALLSDPALTGMTLQQLNDLTETLAPDGDIRRGRPPRLAFPDQVLATVLHLRAALAAEPLAVLFGTSRTAMHRTLLKNR
RLLETHSITIPPATTPPTALAALQARVQAQTSEDNKIKTTC
PDERGDPMSPLRWTVKSTRTIAAELARAGHRISADTVGDLLREEGFSLQANAKTLEGNQHPDRDTQFRYLNEQARNHRDAGQPVISVDTKKKELVGDFKN
SGRQWRPAGEPVPVSVHDFADPQLGKAVPYGIYDLTANTGWVNVGTDHDTAAFAVESIRRWWHGQGQAAYPRATRLLITADAGGSNGYRTRAWKLELAQL
AAETGLTITVCHLPPGTSKWNKIEHRLFSHITMNWSGRPLTSHEVIVQSIAATTTRTGLRVRAELDTNTYPTGVRIKDAEMAALPLTRHAFQGAWNYALH
PQPSPVIPAARAPQTPDPEWNQALLSDPALTGMTLQQLNDLTETLAPDGDIRRGRPPRLAFPDQVLATVLHLRAALAAEPLAVLFGTSRTAMHRTLLKNR
RLLETHSITIPPATTPPTALAALQARVQAQTSEDNKIKTTC
Blast result :
Comments
ISStsp1 is 65% aa similar to ISArch16.
References
1] ISfinder annotation (2008)
2] Fischbach,M., Ward,D., Young,S., Jaffe,D., Gnerre,S., Berlin,A. Heiman,D., Hepburn,T., Sykes,S., Mehta,T., Alvarado,L., Kodira,C.D., Straight,P., Clardy,J., Hung,D., Kolter,R., Mekalanos,J., Walker,S., Walsh,C.T., Lander,E., Galagan,J., Nusbaum,C. and Birren,B.(2008) Direct submission GenBank.
2] Fischbach,M., Ward,D., Young,S., Jaffe,D., Gnerre,S., Berlin,A. Heiman,D., Hepburn,T., Sykes,S., Mehta,T., Alvarado,L., Kodira,C.D., Straight,P., Clardy,J., Hung,D., Kolter,R., Mekalanos,J., Walker,S., Walsh,C.T., Lander,E., Galagan,J., Nusbaum,C. and Birren,B.(2008) Direct submission GenBank.