ISFsp13

  • Family ISAzo13
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP000249 ND Frankia sp.
Frankia sp. CcI3
DNA section
IS Length : 1724 bp

Ends


IR Length : 22/34

IRL : GGAGTCGCCGGAAAATAACTCCGGTCTTTGATCTACGCGGGAGATCGTGG
IRR : GGACTTGCCGATTAATAAGGTCCGTTCTTGATGTTGTGGATCAGGGTGGT

Insertion site


Left flankDirect repeatRight flankDR Length
CAGGCCACCCCCACCCCCTGCAGGGCTCCGGCACGCTCGC0

DNA sequence

GGAGTCGCCGGAAAATAACTCCGGTCTTTGATCTACGCGGGAGATCGTGGGACGCTCCGGCGTGTGGAGCGGATCAACGAGGTGGTGCTCGCGGAGAAGT
TCGCGGTGCTGTTGCCGCATCTGGATGAGCGGCAGCGCCGGCTGGTGCTGGGTGCGGACGCGCGGGCGTTCGGGCATGGCGGGATCCGTCTGGTGGCCCG
GGCGGCCGGGGTATCGGTGGACACGGTCTCGCGTGGTGTCGCCGAGCTGGGGGCGGGCGCAGCCTCGACGGGCCGGGTGCGCGCGCCGGGTGGGGGTCGT
AAGGCGTTGCGGGAGAAGGATCCGGAGCTGGTGGCGGCGCTGCTGGCGCTGGTCGAGCCCGACCAGCGGGGGGCTCCGGAGTCGCCGTTGCGGTGGACGG
TGAAGTCCACCCGCCGGCTCGCCGAGCAGCTCACCGCACGTGGGCATCCGGTCGGCGCGGATACGGTCGGTGGGCTGCTGCGGGCGGAGGGGTTCAGCCT
GCAGGGCACCTCACGCACGACCGAGGGCGCACGTCACCCTGACCGGGACGACCAGTTTCGCTATATCAACGAACGGGTCAAGGAGTTCACCGCGGGCGGG
CAGCCGGTCGTCAGTGTGGACACGAAGAAAAAGGAAGTCCTCGGTGACTACGCCGTCGCCGGACGGGAGTGGCACCGTAAGGGGCAGCCGGTGCGGGTCC
GCGCCCATGACTTTCCCGAGAAGGGCGCGCAGAAGGCAGTGCCCTACGGGGTCTACGATCTGGCCGCCGACACCGGCTGGGTGTCGGTCGGCTGCGACGG
GGACACCGCCGCGTTCGCGGTCGCGACCCTGCGTCGCTGGTGGGACGGGGAAGGCCGTCACCGCTACCCGACCGCGACCCGGCTGCTGATCACCGCGGAC
GTCGGCGGGGCCAACGGCTACCGGGTACGTGCCTGGAAGAAGGAACTCGCCGACCTCGCCCGCACGACCGGCCTGCAGATCACCGTGTGCCACTTCCCGC
CGGGCACGTCGAAATGGAACAAGATCGAGCACCGGTTGTTCTCCCGGATCAGTACGAACTGGCGTGGCCGGCCGTTGACCAGCCACGAGGTCGTGGTCAA
CACGATCGGCGCGACGACGACTCGCACCGGGCTGAGCGTCCACGCCGAACTCGACCCCGGCTCCTACCCGACCGGGCTGACCGTGCCCGACGAGGTCATG
GACGCCCTACCACTGACCGCCCACGACTGGCACGGCCCGTGGAACTACACCCTCGCCCCGGCGCCACCCCGCGCCGTCTCGACGCCGGCGTCCCGGTACG
TCGAGACCGGCCAGCCCGACGACCGGGCCCCGGACTGGCTACACCATCCGACGATCACCGGGATGAACGGCGGCGAGTACGCCACCCTGCTCGCCTCCGT
CGAGCAGTACATCCTCGACCACCCGCCCATCAGCCTGCACCCCAAGCGCGCCCGTCACCGGGTCCTGCGACGCGGGCCCCTGTCGCTGTCCGACCGGCTG
CTGGTCACCGTGATCCACCACCGGTGGACCACCCAGCAGCAGGCCCTCACCCGTCTGCTGGGCTCACCCCGCGGAGCCGTCGGCGACGCGATCCACGAGA
TGACCCCAGTCCTGGACGGCCTCGACCGGCGGATCCAACCCGCGCCGATCACCGCGCCCACCGTCCAGGACCTCACCACCCTGATCCACAACATCAAGAA
CGGACCTTATTAATCGGCAAGTCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1650 bp549 aa641713+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MERINEVVLAEKFAVLLPHLDERQRRLVLGADARAFGHGGIRLVARAAGVSVDTVSRGVAELGAGAASTGRVRAPGGGRKALREKDPELVAALLALVEPD
QRGAPESPLRWTVKSTRRLAEQLTARGHPVGADTVGGLLRAEGFSLQGTSRTTEGARHPDRDDQFRYINERVKEFTAGGQPVVSVDTKKKEVLGDYAVAG
REWHRKGQPVRVRAHDFPEKGAQKAVPYGVYDLAADTGWVSVGCDGDTAAFAVATLRRWWDGEGRHRYPTATRLLITADVGGANGYRVRAWKKELADLAR
TTGLQITVCHFPPGTSKWNKIEHRLFSRISTNWRGRPLTSHEVVVNTIGATTTRTGLSVHAELDPGSYPTGLTVPDEVMDALPLTAHDWHGPWNYTLAPA
PPRAVSTPASRYVETGQPDDRAPDWLHHPTITGMNGGEYATLLASVEQYILDHPPISLHPKRARHRVLRRGPLSLSDRLLVTVIHHRWTTQQQALTRLLG
SPRGAVGDAIHEMTPVLDGLDRRIQPAPITAPTVQDLTTLIHNIKNGPY

 

Blast result :
Comments
ISFsp13 is 61% aa similar to ISArch16.
References
1] ISfinder annotation (2008)
2] Normand,P., Lapierre,P., Tisa,L.S., Gogarten,J.P., Alloisio,N., Bagnarol,E., Bassi,C.A., Berry,A.M., Bickhart,D.M., Choisne,N., Couloux,A., Cournoyer,B., Cruveiller,S., Daubin,V., Demange,N., Francino,M.P., Goltsman,E., Huang,Y., Kopp,O.R., Labarre,L., Lapidus,A., Lavire,C., Marechal,J., Martinez,M., Mastronunzio,J.E., Mullin,B.C., Niemann,J., Pujic,P., Rawnsley,T., Rouy,Z., Schenowitz,C., Sellstedt,A., Tavares,F., Tomkins,J.P., Vallenet,D., Valverde,C., Wall,L.G., Wang,Y., Medigue,C. and Benson,D.R. (2007) Genome Res. 17 (1), 7-15