ISFsp13
- Family ISAzo13
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP000249 | ND | Frankia sp. | Frankia sp. CcI3 |
DNA section
IS Length : 1724 bp
Ends
IR Length : 22/34
IRL : GGAGTCGCCGGAAAATAACTCCGGTCTTTGATCTACGCGGGAGATCGTGG
IRR : GGACTTGCCGATTAATAAGGTCCGTTCTTGATGTTGTGGATCAGGGTGGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CAGGCCACCCCCACCCCCTG | CAGGGCTCCGGCACGCTCGC | 0 |
DNA sequence
GGAGTCGCCGGAAAATAACTCCGGTCTTTGATCTACGCGGGAGATCGTGGGACGCTCCGGCGTGTGGAGCGGATCAACGAGGTGGTGCTCGCGGAGAAGT
TCGCGGTGCTGTTGCCGCATCTGGATGAGCGGCAGCGCCGGCTGGTGCTGGGTGCGGACGCGCGGGCGTTCGGGCATGGCGGGATCCGTCTGGTGGCCCG
GGCGGCCGGGGTATCGGTGGACACGGTCTCGCGTGGTGTCGCCGAGCTGGGGGCGGGCGCAGCCTCGACGGGCCGGGTGCGCGCGCCGGGTGGGGGTCGT
AAGGCGTTGCGGGAGAAGGATCCGGAGCTGGTGGCGGCGCTGCTGGCGCTGGTCGAGCCCGACCAGCGGGGGGCTCCGGAGTCGCCGTTGCGGTGGACGG
TGAAGTCCACCCGCCGGCTCGCCGAGCAGCTCACCGCACGTGGGCATCCGGTCGGCGCGGATACGGTCGGTGGGCTGCTGCGGGCGGAGGGGTTCAGCCT
GCAGGGCACCTCACGCACGACCGAGGGCGCACGTCACCCTGACCGGGACGACCAGTTTCGCTATATCAACGAACGGGTCAAGGAGTTCACCGCGGGCGGG
CAGCCGGTCGTCAGTGTGGACACGAAGAAAAAGGAAGTCCTCGGTGACTACGCCGTCGCCGGACGGGAGTGGCACCGTAAGGGGCAGCCGGTGCGGGTCC
GCGCCCATGACTTTCCCGAGAAGGGCGCGCAGAAGGCAGTGCCCTACGGGGTCTACGATCTGGCCGCCGACACCGGCTGGGTGTCGGTCGGCTGCGACGG
GGACACCGCCGCGTTCGCGGTCGCGACCCTGCGTCGCTGGTGGGACGGGGAAGGCCGTCACCGCTACCCGACCGCGACCCGGCTGCTGATCACCGCGGAC
GTCGGCGGGGCCAACGGCTACCGGGTACGTGCCTGGAAGAAGGAACTCGCCGACCTCGCCCGCACGACCGGCCTGCAGATCACCGTGTGCCACTTCCCGC
CGGGCACGTCGAAATGGAACAAGATCGAGCACCGGTTGTTCTCCCGGATCAGTACGAACTGGCGTGGCCGGCCGTTGACCAGCCACGAGGTCGTGGTCAA
CACGATCGGCGCGACGACGACTCGCACCGGGCTGAGCGTCCACGCCGAACTCGACCCCGGCTCCTACCCGACCGGGCTGACCGTGCCCGACGAGGTCATG
GACGCCCTACCACTGACCGCCCACGACTGGCACGGCCCGTGGAACTACACCCTCGCCCCGGCGCCACCCCGCGCCGTCTCGACGCCGGCGTCCCGGTACG
TCGAGACCGGCCAGCCCGACGACCGGGCCCCGGACTGGCTACACCATCCGACGATCACCGGGATGAACGGCGGCGAGTACGCCACCCTGCTCGCCTCCGT
CGAGCAGTACATCCTCGACCACCCGCCCATCAGCCTGCACCCCAAGCGCGCCCGTCACCGGGTCCTGCGACGCGGGCCCCTGTCGCTGTCCGACCGGCTG
CTGGTCACCGTGATCCACCACCGGTGGACCACCCAGCAGCAGGCCCTCACCCGTCTGCTGGGCTCACCCCGCGGAGCCGTCGGCGACGCGATCCACGAGA
TGACCCCAGTCCTGGACGGCCTCGACCGGCGGATCCAACCCGCGCCGATCACCGCGCCCACCGTCCAGGACCTCACCACCCTGATCCACAACATCAAGAA
CGGACCTTATTAATCGGCAAGTCC
TCGCGGTGCTGTTGCCGCATCTGGATGAGCGGCAGCGCCGGCTGGTGCTGGGTGCGGACGCGCGGGCGTTCGGGCATGGCGGGATCCGTCTGGTGGCCCG
GGCGGCCGGGGTATCGGTGGACACGGTCTCGCGTGGTGTCGCCGAGCTGGGGGCGGGCGCAGCCTCGACGGGCCGGGTGCGCGCGCCGGGTGGGGGTCGT
AAGGCGTTGCGGGAGAAGGATCCGGAGCTGGTGGCGGCGCTGCTGGCGCTGGTCGAGCCCGACCAGCGGGGGGCTCCGGAGTCGCCGTTGCGGTGGACGG
TGAAGTCCACCCGCCGGCTCGCCGAGCAGCTCACCGCACGTGGGCATCCGGTCGGCGCGGATACGGTCGGTGGGCTGCTGCGGGCGGAGGGGTTCAGCCT
GCAGGGCACCTCACGCACGACCGAGGGCGCACGTCACCCTGACCGGGACGACCAGTTTCGCTATATCAACGAACGGGTCAAGGAGTTCACCGCGGGCGGG
CAGCCGGTCGTCAGTGTGGACACGAAGAAAAAGGAAGTCCTCGGTGACTACGCCGTCGCCGGACGGGAGTGGCACCGTAAGGGGCAGCCGGTGCGGGTCC
GCGCCCATGACTTTCCCGAGAAGGGCGCGCAGAAGGCAGTGCCCTACGGGGTCTACGATCTGGCCGCCGACACCGGCTGGGTGTCGGTCGGCTGCGACGG
GGACACCGCCGCGTTCGCGGTCGCGACCCTGCGTCGCTGGTGGGACGGGGAAGGCCGTCACCGCTACCCGACCGCGACCCGGCTGCTGATCACCGCGGAC
GTCGGCGGGGCCAACGGCTACCGGGTACGTGCCTGGAAGAAGGAACTCGCCGACCTCGCCCGCACGACCGGCCTGCAGATCACCGTGTGCCACTTCCCGC
CGGGCACGTCGAAATGGAACAAGATCGAGCACCGGTTGTTCTCCCGGATCAGTACGAACTGGCGTGGCCGGCCGTTGACCAGCCACGAGGTCGTGGTCAA
CACGATCGGCGCGACGACGACTCGCACCGGGCTGAGCGTCCACGCCGAACTCGACCCCGGCTCCTACCCGACCGGGCTGACCGTGCCCGACGAGGTCATG
GACGCCCTACCACTGACCGCCCACGACTGGCACGGCCCGTGGAACTACACCCTCGCCCCGGCGCCACCCCGCGCCGTCTCGACGCCGGCGTCCCGGTACG
TCGAGACCGGCCAGCCCGACGACCGGGCCCCGGACTGGCTACACCATCCGACGATCACCGGGATGAACGGCGGCGAGTACGCCACCCTGCTCGCCTCCGT
CGAGCAGTACATCCTCGACCACCCGCCCATCAGCCTGCACCCCAAGCGCGCCCGTCACCGGGTCCTGCGACGCGGGCCCCTGTCGCTGTCCGACCGGCTG
CTGGTCACCGTGATCCACCACCGGTGGACCACCCAGCAGCAGGCCCTCACCCGTCTGCTGGGCTCACCCCGCGGAGCCGTCGGCGACGCGATCCACGAGA
TGACCCCAGTCCTGGACGGCCTCGACCGGCGGATCCAACCCGCGCCGATCACCGCGCCCACCGTCCAGGACCTCACCACCCTGATCCACAACATCAAGAA
CGGACCTTATTAATCGGCAAGTCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1650 bp | 549 aa | 64 | 1713 | + | No |
Chemistry : Unknow
ORF sequence :
MERINEVVLAEKFAVLLPHLDERQRRLVLGADARAFGHGGIRLVARAAGVSVDTVSRGVAELGAGAASTGRVRAPGGGRKALREKDPELVAALLALVEPD
QRGAPESPLRWTVKSTRRLAEQLTARGHPVGADTVGGLLRAEGFSLQGTSRTTEGARHPDRDDQFRYINERVKEFTAGGQPVVSVDTKKKEVLGDYAVAG
REWHRKGQPVRVRAHDFPEKGAQKAVPYGVYDLAADTGWVSVGCDGDTAAFAVATLRRWWDGEGRHRYPTATRLLITADVGGANGYRVRAWKKELADLAR
TTGLQITVCHFPPGTSKWNKIEHRLFSRISTNWRGRPLTSHEVVVNTIGATTTRTGLSVHAELDPGSYPTGLTVPDEVMDALPLTAHDWHGPWNYTLAPA
PPRAVSTPASRYVETGQPDDRAPDWLHHPTITGMNGGEYATLLASVEQYILDHPPISLHPKRARHRVLRRGPLSLSDRLLVTVIHHRWTTQQQALTRLLG
SPRGAVGDAIHEMTPVLDGLDRRIQPAPITAPTVQDLTTLIHNIKNGPY
QRGAPESPLRWTVKSTRRLAEQLTARGHPVGADTVGGLLRAEGFSLQGTSRTTEGARHPDRDDQFRYINERVKEFTAGGQPVVSVDTKKKEVLGDYAVAG
REWHRKGQPVRVRAHDFPEKGAQKAVPYGVYDLAADTGWVSVGCDGDTAAFAVATLRRWWDGEGRHRYPTATRLLITADVGGANGYRVRAWKKELADLAR
TTGLQITVCHFPPGTSKWNKIEHRLFSRISTNWRGRPLTSHEVVVNTIGATTTRTGLSVHAELDPGSYPTGLTVPDEVMDALPLTAHDWHGPWNYTLAPA
PPRAVSTPASRYVETGQPDDRAPDWLHHPTITGMNGGEYATLLASVEQYILDHPPISLHPKRARHRVLRRGPLSLSDRLLVTVIHHRWTTQQQALTRLLG
SPRGAVGDAIHEMTPVLDGLDRRIQPAPITAPTVQDLTTLIHNIKNGPY
Blast result :
Comments
ISFsp13 is 61% aa similar to ISArch16.
References
1] ISfinder annotation (2008)
2] Normand,P., Lapierre,P., Tisa,L.S., Gogarten,J.P., Alloisio,N., Bagnarol,E., Bassi,C.A., Berry,A.M., Bickhart,D.M., Choisne,N., Couloux,A., Cournoyer,B., Cruveiller,S., Daubin,V., Demange,N., Francino,M.P., Goltsman,E., Huang,Y., Kopp,O.R., Labarre,L., Lapidus,A., Lavire,C., Marechal,J., Martinez,M., Mastronunzio,J.E., Mullin,B.C., Niemann,J., Pujic,P., Rawnsley,T., Rouy,Z., Schenowitz,C., Sellstedt,A., Tavares,F., Tomkins,J.P., Vallenet,D., Valverde,C., Wall,L.G., Wang,Y., Medigue,C. and Benson,D.R. (2007) Genome Res. 17 (1), 7-15
2] Normand,P., Lapierre,P., Tisa,L.S., Gogarten,J.P., Alloisio,N., Bagnarol,E., Bassi,C.A., Berry,A.M., Bickhart,D.M., Choisne,N., Couloux,A., Cournoyer,B., Cruveiller,S., Daubin,V., Demange,N., Francino,M.P., Goltsman,E., Huang,Y., Kopp,O.R., Labarre,L., Lapidus,A., Lavire,C., Marechal,J., Martinez,M., Mastronunzio,J.E., Mullin,B.C., Niemann,J., Pujic,P., Rawnsley,T., Rouy,Z., Schenowitz,C., Sellstedt,A., Tavares,F., Tomkins,J.P., Vallenet,D., Valverde,C., Wall,L.G., Wang,Y., Medigue,C. and Benson,D.R. (2007) Genome Res. 17 (1), 7-15