ISMno33
- Family IS1182
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_011894 | ND | Methylobacterium nodulans | Methylobacterium nodulans ORS 2060 |
DNA section
IS Length : 1767 bp
Ends
IR Length : 17
IRL : GACACTGTTGGCGAAGTGAGCATGGTCGGTCTGGCGGACGTTGAGCTGGC
IRR : GACACTGTTGGCGAAGTCATCGCTCTGCGGCGAGGGCAGCGAAGCGTGAG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| ATTCGCATAA | GGGCGG | CATACGGAAC | 6 |
DNA sequence
GACACTGTTGGCGAAGTGAGCATGGTCGGTCTGGCGGACGTTGAGCTGGCATCCCTGCCCGGAGGCCGTCCATGTCGCTCCCTTCGCAGCCGCTGCCACC
CGTGCCCGAAGACACCGCCCGGGTTGCGCAGGCCGCGTTCCGGCGAGGCAACCCGTACATGCTGCTGCGTGACCGGCTCGGCGCCTTGTTCGCCGACGCC
GACTTCGCCGACCTCTACCCCAGGCTCGGCCAGCCCGCGTACGCGCCCTGGCGCCTCGCGCTCGTCACGCTCATGCAGTTCCGCGAGGGTTTGAGTGACC
GGCGAGCGGCCGAGGCGGTGCGGGGCCGGATCGACTGGAAATACCTGCTCGCTCTCGACTTGACGGACGCGGGCTTCGACTTCTCCGTCCTGTGCGAGTT
CCGGGCTCGCCTGCTGCGGCACGGGGCGAGCGAGCGCTTGCTCGACAGCTTGCTGGAGGTGGCCCGCGCAGGTGGGCTGGTCAAGGCTCGCGGTCGGCAG
CGCACGGACAGCACGCACGTGCTGGCTGCCATCCGCCTGATGAACCGCCTGGAGCTGGTGGCCGAGACGCTGCGCGCGGCACTCAACGCCGTGGCCATCG
CGGCCCCGGCCTGGCTGCGCACCCTCGCGCCGGCGGACTGGCACGAACGCTACGACCGGCGGGTCGAGGATGCCGACCTGCCCGGCCCCGGCCCCAAGCG
CGACGCCTACGTCGTCCGGGTGGGGGCGGACGGCTTCCACCTGCTTGATGCGCTGGATACCCCCGAGGCGCCCCCGCAGGCGCGGAATTTGCCCGAGGTC
GCGGTACTGCGTCGGGTGTGGGAGCGCCACTTTGCGCGGGGCGGGGCGGGCACGCAGGGGGATCCGACCTCCGGCGTGCGGGTGTGCGCCCTCCAGAGCC
GCGGCCCGGGCGACCGCGTTCAGTCACCCTACGACACCGAGGCCCGCTTCCGCACCAAGCGGATGACGGGCTGGACCGGCTACATGGTCCACCTCACCGA
GACCTGCGACGCCGGTGCGCCGCACCTGATCGTGCACACCGACGCCACGGTCGCCAACGTGCACGAGGTGATGCGGCTCGCGGCGATCCACGACGCGCTG
GCCGCCAAGGGCTTGATCCCGTCCGAGCACCTCGCGGACGCGGCCTACGTCAGCGCGGAGCAGCTCGCCGCCGCCCACGAGCGCCACCAAGTCGACTTGA
TCGGCCCGCCTCGGCCGCAGTCGACCTGGCAGAACCGCAGCCCGGACGGCTTCGGCGTCGCGGACTTCGCGGTGGATTGGGATGGCCGCGTCGTGCGCTG
CCCCGAAGGCCGCAGCAATGCGTCCTGGCGCGAGTTCACCCGGCGCTCCTACGACGAGGCGCGCGGACGTCGCATCCGCATCTGCTTCGCCGCCGCCGAT
TGTGCCCCATGCCCGTCCCGAGCGCGCTGCACGTCGGGTCGTCGGCAGGGGCGGCAGCTGACGCTGCACCTGCGCGCAGAACACGAGGCGCTGGCAGCAG
CCCGGGCTCGGCAGGCCGGTGAGGTGGGGCGCCTCTACGCCCAGCGGCGCGGGATCGAAGGCACGATCGCGCAGGGCGTGCGCGCCTTCGGCCTACGCCG
GGCACGCTATCGCGGCTTGGCCAAGACCGGCTTGCAGAGCATCGCCATCGCCGCGGCCCTCAACCTCGACCGGCTCGCCGCCTGGTTCGCCCAGCGTCCG
CTCGCCCCGACACGCACCTCACGCTTCGCTGCCCTCGCCGCAGAGCGATGACTTCGCCAACAGTGTC
CGTGCCCGAAGACACCGCCCGGGTTGCGCAGGCCGCGTTCCGGCGAGGCAACCCGTACATGCTGCTGCGTGACCGGCTCGGCGCCTTGTTCGCCGACGCC
GACTTCGCCGACCTCTACCCCAGGCTCGGCCAGCCCGCGTACGCGCCCTGGCGCCTCGCGCTCGTCACGCTCATGCAGTTCCGCGAGGGTTTGAGTGACC
GGCGAGCGGCCGAGGCGGTGCGGGGCCGGATCGACTGGAAATACCTGCTCGCTCTCGACTTGACGGACGCGGGCTTCGACTTCTCCGTCCTGTGCGAGTT
CCGGGCTCGCCTGCTGCGGCACGGGGCGAGCGAGCGCTTGCTCGACAGCTTGCTGGAGGTGGCCCGCGCAGGTGGGCTGGTCAAGGCTCGCGGTCGGCAG
CGCACGGACAGCACGCACGTGCTGGCTGCCATCCGCCTGATGAACCGCCTGGAGCTGGTGGCCGAGACGCTGCGCGCGGCACTCAACGCCGTGGCCATCG
CGGCCCCGGCCTGGCTGCGCACCCTCGCGCCGGCGGACTGGCACGAACGCTACGACCGGCGGGTCGAGGATGCCGACCTGCCCGGCCCCGGCCCCAAGCG
CGACGCCTACGTCGTCCGGGTGGGGGCGGACGGCTTCCACCTGCTTGATGCGCTGGATACCCCCGAGGCGCCCCCGCAGGCGCGGAATTTGCCCGAGGTC
GCGGTACTGCGTCGGGTGTGGGAGCGCCACTTTGCGCGGGGCGGGGCGGGCACGCAGGGGGATCCGACCTCCGGCGTGCGGGTGTGCGCCCTCCAGAGCC
GCGGCCCGGGCGACCGCGTTCAGTCACCCTACGACACCGAGGCCCGCTTCCGCACCAAGCGGATGACGGGCTGGACCGGCTACATGGTCCACCTCACCGA
GACCTGCGACGCCGGTGCGCCGCACCTGATCGTGCACACCGACGCCACGGTCGCCAACGTGCACGAGGTGATGCGGCTCGCGGCGATCCACGACGCGCTG
GCCGCCAAGGGCTTGATCCCGTCCGAGCACCTCGCGGACGCGGCCTACGTCAGCGCGGAGCAGCTCGCCGCCGCCCACGAGCGCCACCAAGTCGACTTGA
TCGGCCCGCCTCGGCCGCAGTCGACCTGGCAGAACCGCAGCCCGGACGGCTTCGGCGTCGCGGACTTCGCGGTGGATTGGGATGGCCGCGTCGTGCGCTG
CCCCGAAGGCCGCAGCAATGCGTCCTGGCGCGAGTTCACCCGGCGCTCCTACGACGAGGCGCGCGGACGTCGCATCCGCATCTGCTTCGCCGCCGCCGAT
TGTGCCCCATGCCCGTCCCGAGCGCGCTGCACGTCGGGTCGTCGGCAGGGGCGGCAGCTGACGCTGCACCTGCGCGCAGAACACGAGGCGCTGGCAGCAG
CCCGGGCTCGGCAGGCCGGTGAGGTGGGGCGCCTCTACGCCCAGCGGCGCGGGATCGAAGGCACGATCGCGCAGGGCGTGCGCGCCTTCGGCCTACGCCG
GGCACGCTATCGCGGCTTGGCCAAGACCGGCTTGCAGAGCATCGCCATCGCCGCGGCCCTCAACCTCGACCGGCTCGCCGCCTGGTTCGCCCAGCGTCCG
CTCGCCCCGACACGCACCTCACGCTTCGCTGCCCTCGCCGCAGAGCGATGACTTCGCCAACAGTGTC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1680 bp | 559 aa | 72 | 1751 | + | No |
Chemistry : DDE
ORF sequence :
MSLPSQPLPPVPEDTARVAQAAFRRGNPYMLLRDRLGALFADADFADLYPRLGQPAYAPWRLALVTLMQFREGLSDRRAAEAVRGRIDWKYLLALDLTDA
GFDFSVLCEFRARLLRHGASERLLDSLLEVARAGGLVKARGRQRTDSTHVLAAIRLMNRLELVAETLRAALNAVAIAAPAWLRTLAPADWHERYDRRVED
ADLPGPGPKRDAYVVRVGADGFHLLDALDTPEAPPQARNLPEVAVLRRVWERHFARGGAGTQGDPTSGVRVCALQSRGPGDRVQSPYDTEARFRTKRMTG
WTGYMVHLTETCDAGAPHLIVHTDATVANVHEVMRLAAIHDALAAKGLIPSEHLADAAYVSAEQLAAAHERHQVDLIGPPRPQSTWQNRSPDGFGVADFA
VDWDGRVVRCPEGRSNASWREFTRRSYDEARGRRIRICFAAADCAPCPSRARCTSGRRQGRQLTLHLRAEHEALAAARARQAGEVGRLYAQRRGIEGTIA
QGVRAFGLRRARYRGLAKTGLQSIAIAAALNLDRLAAWFAQRPLAPTRTSRFAALAAER
GFDFSVLCEFRARLLRHGASERLLDSLLEVARAGGLVKARGRQRTDSTHVLAAIRLMNRLELVAETLRAALNAVAIAAPAWLRTLAPADWHERYDRRVED
ADLPGPGPKRDAYVVRVGADGFHLLDALDTPEAPPQARNLPEVAVLRRVWERHFARGGAGTQGDPTSGVRVCALQSRGPGDRVQSPYDTEARFRTKRMTG
WTGYMVHLTETCDAGAPHLIVHTDATVANVHEVMRLAAIHDALAAKGLIPSEHLADAAYVSAEQLAAAHERHQVDLIGPPRPQSTWQNRSPDGFGVADFA
VDWDGRVVRCPEGRSNASWREFTRRSYDEARGRRIRICFAAADCAPCPSRARCTSGRRQGRQLTLHLRAEHEALAAARARQAGEVGRLYAQRRGIEGTIA
QGVRAFGLRRARYRGLAKTGLQSIAIAAALNLDRLAAWFAQRPLAPTRTSRFAALAAER
Blast result :
Comments
ISMno33 is 76% aa similar to ISMno10.
References
1] Ming-Chun Lee and David Robinson (2009) Direct submission.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2009) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2009) Direct submission GenBank.