ISMno37
- Family IS6
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_011894 | ND | Methylobacterium nodulans | Methylobacterium nodulans ORS 2060 |
DNA section
IS Length : 889 bp
Ends
IR Length : 25/34
IRL : GGGCCTGTCGCAAACGCGATGACGTTCACCAGCCATTAGGCATACCAGCC
IRR : GGGCTTGTCGCAAACTCGGAGCCGGGGACGCAGCAGGGGCTCTGCCGTCC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CGCGTGACGC | TTCCACCCTT | 0 |
DNA sequence
GGGCCTGTCGCAAACGCGATGACGTTCACCAGCCATTAGGCATACCAGCCCAGCTTGCCGCCTCCGCCCCGGAGCCGGCCCATGATCCTCAACGCCCTCG
CCCTCAAGCTGAAGCGCCAAGCTCGCGGCGACTTCAAGGGCCGGCACTTCGAGGCCACGCTCATCGTCCAAGCTGTCTCCTGGTATCTGCGCTACGCCCT
GAGCTACCGCGACATCGAGGAGATGCTGCTCGAACGCGGCCTGGAGGTGGATCACTCCACCCTCAATCGCTGGGTGCTCGCCTACGCGCCGGCCATCGAG
CGCCGCTTACGCATGCTCCGCAAACCGCATTGCGGATCGGTGCGCGTCGACGAAACGTACATCTGCATCCGGGGCCAGTGGCGCTACCTGTACCGCGCCA
TCGACAAGCACGGGGAGCCGGTCGACTTCCTCCTCACCGCCCACCGCGACCTGGACGCCGCCAAGCGCTTCTTCCGCAAGATGCTCAAGGAGGAGCCGCT
GCTCGCGCCGGATCGCATCGGCACCGATGGAGCCGGCCCCTACCCGCCGGCCATCGCCGAAAGCCACGAGGAGGGTCTGCTGCCCCGGGCACCGACCCAC
CACGTCACCAAGCACCTGCAGCAAGGGATCGAGAGCGACCACTTCCGGGTCAAGCGGCCGATGCCCCGCGTGGGCGGGTTCCGCTCGTTCACCACGGGGC
GGCGCACGATCCAGGGCTTCGAGGCCATGCTGTGGTTGCGCAAGGGCTTCGGGTTCGCGGGGGCGTGGACCGTGCGCGAGCAGAACCAACTGCTCGCGCA
CTGCTTCGGACTTCCCGTCGCGAACAAAGCGTGAAAGCGGGACGGCAGAGCCCCTGCTGCGTCCCCGGCTCCGAGTTTGCGACAAGCCC
CCCTCAAGCTGAAGCGCCAAGCTCGCGGCGACTTCAAGGGCCGGCACTTCGAGGCCACGCTCATCGTCCAAGCTGTCTCCTGGTATCTGCGCTACGCCCT
GAGCTACCGCGACATCGAGGAGATGCTGCTCGAACGCGGCCTGGAGGTGGATCACTCCACCCTCAATCGCTGGGTGCTCGCCTACGCGCCGGCCATCGAG
CGCCGCTTACGCATGCTCCGCAAACCGCATTGCGGATCGGTGCGCGTCGACGAAACGTACATCTGCATCCGGGGCCAGTGGCGCTACCTGTACCGCGCCA
TCGACAAGCACGGGGAGCCGGTCGACTTCCTCCTCACCGCCCACCGCGACCTGGACGCCGCCAAGCGCTTCTTCCGCAAGATGCTCAAGGAGGAGCCGCT
GCTCGCGCCGGATCGCATCGGCACCGATGGAGCCGGCCCCTACCCGCCGGCCATCGCCGAAAGCCACGAGGAGGGTCTGCTGCCCCGGGCACCGACCCAC
CACGTCACCAAGCACCTGCAGCAAGGGATCGAGAGCGACCACTTCCGGGTCAAGCGGCCGATGCCCCGCGTGGGCGGGTTCCGCTCGTTCACCACGGGGC
GGCGCACGATCCAGGGCTTCGAGGCCATGCTGTGGTTGCGCAAGGGCTTCGGGTTCGCGGGGGCGTGGACCGTGCGCGAGCAGAACCAACTGCTCGCGCA
CTGCTTCGGACTTCCCGTCGCGAACAAAGCGTGAAAGCGGGACGGCAGAGCCCCTGCTGCGTCCCCGGCTCCGAGTTTGCGACAAGCCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 753 bp | 250 aa | 82 | 834 | + | No |
Chemistry : DDE
ORF sequence :
MILNALALKLKRQARGDFKGRHFEATLIVQAVSWYLRYALSYRDIEEMLLERGLEVDHSTLNRWVLAYAPAIERRLRMLRKPHCGSVRVDETYICIRGQW
RYLYRAIDKHGEPVDFLLTAHRDLDAAKRFFRKMLKEEPLLAPDRIGTDGAGPYPPAIAESHEEGLLPRAPTHHVTKHLQQGIESDHFRVKRPMPRVGGF
RSFTTGRRTIQGFEAMLWLRKGFGFAGAWTVREQNQLLAHCFGLPVANKA
RYLYRAIDKHGEPVDFLLTAHRDLDAAKRFFRKMLKEEPLLAPDRIGTDGAGPYPPAIAESHEEGLLPRAPTHHVTKHLQQGIESDHFRVKRPMPRVGGF
RSFTTGRRTIQGFEAMLWLRKGFGFAGAWTVREQNQLLAHCFGLPVANKA
Blast result :
Comments
ISMno37 is 96% aa similar to ISMno28.
References
1] Ming-Chun Lee and David Robinson (2009) Direct submission.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2009) Direct submission.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2009) Direct submission.