ISMtsp20
- Family IS5
- Group IS1031
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_010511 | ND | Methylobacterium sp. | Methylobacterium sp. 4-46 |
DNA section
IS Length : 926 bp
Ends
IR Length : 12/16
IRL : GAGCCGGGCCGGAAAGGAATTGAGTAATATCAATGAGTTGTGGTTCCTCC
IRR : GAGCCGGACTCAAAAGTTCACGTTGGAAAGCAGTACCCTGCGAGCCGTCG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GGCCTTCTTC | TGA | ACGGCAGCCG | 3 |
DNA sequence
GAGCCGGGCCGGAAAGGAATTGAGTAATATCAATGAGTTGTGGTTCCTCCATCCCGATGAGAGGAGGATCCGATGGCCTGGGATGATGCGGCTCGCTACC
ACCATCGGCGTTCGTCAGCTCGCTATCCGAGTGACATGACGGATCGGGAATGGGCCGTGATCGCTCCGCTTCTGCCCCCACCCAAGCCTGGAGGGCGGCC
GCGCACGACCGAACTGCGGGCGGTGATGGATGCCATCCTGTACATCGCCACCGGCGGCTGCCAATGGCGGATGCTGCCCAAGGATTTTCCGCCCCGCTCG
ACGGTGCAGGGCTACTTCTACAGCTGGCGGGACAGCCGCCTCTGGGAGACAATCAACCACCTGCTGGTCCTGAGCGCGCGTGAGCTGGAGGGACGGGAGG
CCAGCCCGACGGCCGGTGTCATCGACAGCCAAAGTGTGAAGACAAGCGAGAGCGGAGGGCTGGCGGGTTACGATGCGGCCAAGAAGATCCAAGGCCGCAA
GCGCCACATCGTGACCGACACCCTCGGGCTGATGCTCTTCGTCCTCGTTCACGGGGCTGATGTGCAGGATCGCGACGGCGCCCCGTCTCTGCTGAAGGCG
ATCCGCCACCGCTTTCCCTGGCTGCGCCACATCTTCGCCGATGGCGGCTATGCAGGCGAGAAGCTGCGCGGAGCGCTGCACGGTCAGGGCGTCTGGACCA
TCGCAATCATCAAACGATCCGACACGGCCAGGGGCTTTGAGGTTCTCCCGCGCAGGTGGGTTGTTGAACGAACATTCGCCTGGCTTGGCCGTTGCCGGCG
TCTTGCCAAGGATTGGGAGAAAACCACCGCGAGTTCCACGGCGTGGGCCTTTATCGCCAGCATCCGGCTGATGTCACGACGGCTCGCAGGGTACTGCTTT
CCAACGTGAACTTTTGAGTCCGGCTC
ACCATCGGCGTTCGTCAGCTCGCTATCCGAGTGACATGACGGATCGGGAATGGGCCGTGATCGCTCCGCTTCTGCCCCCACCCAAGCCTGGAGGGCGGCC
GCGCACGACCGAACTGCGGGCGGTGATGGATGCCATCCTGTACATCGCCACCGGCGGCTGCCAATGGCGGATGCTGCCCAAGGATTTTCCGCCCCGCTCG
ACGGTGCAGGGCTACTTCTACAGCTGGCGGGACAGCCGCCTCTGGGAGACAATCAACCACCTGCTGGTCCTGAGCGCGCGTGAGCTGGAGGGACGGGAGG
CCAGCCCGACGGCCGGTGTCATCGACAGCCAAAGTGTGAAGACAAGCGAGAGCGGAGGGCTGGCGGGTTACGATGCGGCCAAGAAGATCCAAGGCCGCAA
GCGCCACATCGTGACCGACACCCTCGGGCTGATGCTCTTCGTCCTCGTTCACGGGGCTGATGTGCAGGATCGCGACGGCGCCCCGTCTCTGCTGAAGGCG
ATCCGCCACCGCTTTCCCTGGCTGCGCCACATCTTCGCCGATGGCGGCTATGCAGGCGAGAAGCTGCGCGGAGCGCTGCACGGTCAGGGCGTCTGGACCA
TCGCAATCATCAAACGATCCGACACGGCCAGGGGCTTTGAGGTTCTCCCGCGCAGGTGGGTTGTTGAACGAACATTCGCCTGGCTTGGCCGTTGCCGGCG
TCTTGCCAAGGATTGGGAGAAAACCACCGCGAGTTCCACGGCGTGGGCCTTTATCGCCAGCATCCGGCTGATGTCACGACGGCTCGCAGGGTACTGCTTT
CCAACGTGAACTTTTGAGTCCGGCTC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 837 bp | 278 aa | 73 | 909 | + | No |
Chemistry : DDE
ORF sequence :
MAWDDAARYHHRRSSARYPSDMTDREWAVIAPLLPPPKPGGRPRTTELRAVMDAILYIATGGCQWRMLPKDFPPRSTVQGYFYSWRDSRLWETINHLLVL
SARELEGREASPTAGVIDSQSVKTSESGGLAGYDAAKKIQGRKRHIVTDTLGLMLFVLVHGADVQDRDGAPSLLKAIRHRFPWLRHIFADGGYAGEKLRG
ALHGQGVWTIAIIKRSDTARGFEVLPRRWVVERTFAWLGRCRRLAKDWEKTTASSTAWAFIASIRLMSRRLAGYCFPT
SARELEGREASPTAGVIDSQSVKTSESGGLAGYDAAKKIQGRKRHIVTDTLGLMLFVLVHGADVQDRDGAPSLLKAIRHRFPWLRHIFADGGYAGEKLRG
ALHGQGVWTIAIIKRSDTARGFEVLPRRWVVERTFAWLGRCRRLAKDWEKTTASSTAWAFIASIRLMSRRLAGYCFPT
Blast result :
Comments
ISMtsp20 is 84% aa similar to IS1031D.
References
1] Ming-Chun Lee and David Robinson (2009) Direct submission.
2] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E.,Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T.,Detter,J.C., Han,C., Kuske,C.R., Schmutz,J., Larimer,F., Land,M.,Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2008) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E.,Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T.,Detter,J.C., Han,C., Kuske,C.R., Schmutz,J., Larimer,F., Land,M.,Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2008) Direct submission GenBank.