ISMtsp15
- Family IS481
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_010511 | ND | Methylobacterium sp. | Methylobacterium sp. 4-46 |
DNA section
IS Length : 1122 bp
Ends
IR Length : 18/25
IRL : TGTGAGGTTCGGCGACATCGTTTCAATCTCGCCGTCCGCGCTCCCGGCCG
IRR : TGTAGGGTCTGGGGAGATCATTTCACCGCGGCCAAGGCCTGATCGATGCG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CTTGCCGCGC | CATGATC | CCCTTCGCGG | 7 |
| GGCCAGCAGC | GTTCATCGGC | 0 | |
| CTGTGCTGGC | CATAATCCTT | 0 |
DNA sequence
TGTGAGGTTCGGCGACATCGTTTCAATCTCGCCGTCCGCGCTCCCGGCCGATCTGGCATTCCGATTGCTGCTTCTGCTGTGGAGCTGTGGGCAGCGCGGC
ACGCGCTGTCCATCAGATCCCCAGCCAACGCGAGACACGGCCATGGATCTGACGAAGGCGCGTCTGGGATGGATTGAACTCTATGCCCAGACCGGCGACG
CCGGCCTCGTTTGCCGCCGCTGCGGCATCTCACGCCCGACGTTGCGCAAGTGGTGGCGGAGGTATCAGGCCGCTGGTCCAGCTGGGCTGGTGGAACACAG
CCGCCGTCCGCGACGCTTGGCAGCTCAGAAGGTGTTTGCAGAGCACGAGACGCTGATCCTCAGCCTCCGACGCGACCGCAAGCTCGGGATCAAGCAGCTC
CGCAATGAGCTCGTCCGTCAGCACGATCTGACGCTGTCGCTCGACACCATCCATCGCGTGCTCGTCCGTCACGGCGAGCAAGTGCTCAAGCGACCGCGGC
GGCGCGTCAGAGGGAAGCTCCGCTATAGTCGACCCGTGCCGGGCGATCGGGTGCAGATGGACGCCTGCAAAATCTGCCCGGGTGTGTACCAGTACACCGC
CATAGATGACTGCTCGCGCTACGCCGTGTTGGGGATCTATCCACGCCGGACCGCCGCGAACACTCTCGATTTTCTCGACCGCGTGATCGAGGAGATGCCG
TTTGCCATTCAGCGGATCCAGACCGACCGCGGACGCGAATTCTTTGCCGAGGCTGTGCAGCAGCGGCTGATCGACTGGGGCATCAAGTTCCGCCCGATCC
CGCCACGATCGCCCCATCTGAATGGCAAGGTCGAGCGCAGCCATCGCGCCGCTCTTGAGGAGTTCTGGACCACTGTGGATCCGAAATCCGCGGACATCGC
CGACCGCGTGGCCGAGTGGCAGCATCACTGGAACTGGAGCCGCCCCCATTCGGCGCTTGATGGCGCATCTCCCATCGACCGGGTGGCTGAACGCTCGGAC
CAGACGCCGCTCCGAGAAGAGGTGGAAGCCCTCTTCGACCCCGCTAAAGCGCGCATCCGTCATCCGGACTACCGCATCGATCAGGCCTTGGCCGCGGTGA
AATGATCTCCCCAGACCCTACA
ACGCGCTGTCCATCAGATCCCCAGCCAACGCGAGACACGGCCATGGATCTGACGAAGGCGCGTCTGGGATGGATTGAACTCTATGCCCAGACCGGCGACG
CCGGCCTCGTTTGCCGCCGCTGCGGCATCTCACGCCCGACGTTGCGCAAGTGGTGGCGGAGGTATCAGGCCGCTGGTCCAGCTGGGCTGGTGGAACACAG
CCGCCGTCCGCGACGCTTGGCAGCTCAGAAGGTGTTTGCAGAGCACGAGACGCTGATCCTCAGCCTCCGACGCGACCGCAAGCTCGGGATCAAGCAGCTC
CGCAATGAGCTCGTCCGTCAGCACGATCTGACGCTGTCGCTCGACACCATCCATCGCGTGCTCGTCCGTCACGGCGAGCAAGTGCTCAAGCGACCGCGGC
GGCGCGTCAGAGGGAAGCTCCGCTATAGTCGACCCGTGCCGGGCGATCGGGTGCAGATGGACGCCTGCAAAATCTGCCCGGGTGTGTACCAGTACACCGC
CATAGATGACTGCTCGCGCTACGCCGTGTTGGGGATCTATCCACGCCGGACCGCCGCGAACACTCTCGATTTTCTCGACCGCGTGATCGAGGAGATGCCG
TTTGCCATTCAGCGGATCCAGACCGACCGCGGACGCGAATTCTTTGCCGAGGCTGTGCAGCAGCGGCTGATCGACTGGGGCATCAAGTTCCGCCCGATCC
CGCCACGATCGCCCCATCTGAATGGCAAGGTCGAGCGCAGCCATCGCGCCGCTCTTGAGGAGTTCTGGACCACTGTGGATCCGAAATCCGCGGACATCGC
CGACCGCGTGGCCGAGTGGCAGCATCACTGGAACTGGAGCCGCCCCCATTCGGCGCTTGATGGCGCATCTCCCATCGACCGGGTGGCTGAACGCTCGGAC
CAGACGCCGCTCCGAGAAGAGGTGGAAGCCCTCTTCGACCCCGCTAAAGCGCGCATCCGTCATCCGGACTACCGCATCGATCAGGCCTTGGCCGCGGTGA
AATGATCTCCCCAGACCCTACA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 963 bp | 320 aa | 143 | 1105 | + | No |
Chemistry : DDE
ORF sequence :
MDLTKARLGWIELYAQTGDAGLVCRRCGISRPTLRKWWRRYQAAGPAGLVEHSRRPRRLAAQKVFAEHETLILSLRRDRKLGIKQLRNELVRQHDLTLSL
DTIHRVLVRHGEQVLKRPRRRVRGKLRYSRPVPGDRVQMDACKICPGVYQYTAIDDCSRYAVLGIYPRRTAANTLDFLDRVIEEMPFAIQRIQTDRGREF
FAEAVQQRLIDWGIKFRPIPPRSPHLNGKVERSHRAALEEFWTTVDPKSADIADRVAEWQHHWNWSRPHSALDGASPIDRVAERSDQTPLREEVEALFDP
AKARIRHPDYRIDQALAAVK
DTIHRVLVRHGEQVLKRPRRRVRGKLRYSRPVPGDRVQMDACKICPGVYQYTAIDDCSRYAVLGIYPRRTAANTLDFLDRVIEEMPFAIQRIQTDRGREF
FAEAVQQRLIDWGIKFRPIPPRSPHLNGKVERSHRAALEEFWTTVDPKSADIADRVAEWQHHWNWSRPHSALDGASPIDRVAERSDQTPLREEVEALFDP
AKARIRHPDYRIDQALAAVK
Blast result :
Comments
ISMtsp15 is 70% aa similar to ISVch1.
References
1] Ming-Chun Lee and David Robinson (2009) Direct submission.
2] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E.,Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T.,Detter,J.C., Han,C., Kuske,C.R., Schmutz,J., Larimer,F., Land,M.,Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2008) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E.,Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T.,Detter,J.C., Han,C., Kuske,C.R., Schmutz,J., Larimer,F., Land,M.,Hauser,L., Kyrpides,N., Ivanova,N., Marx,C.J. and Richardson,P. (2008) Direct submission GenBank.