ISPrsp1
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_GG698740 | ND | Parabacteroides sp. | Parabacteroides sp. D13 |
DNA section
IS Length : 983 bp
Ends
IR Length : 25/26
IRL : TAGGTATAGGCGTTTAGTGCGCACTAACTTTATGGATTTTGCCTACTTTT
IRR : TAGGTATAGGCGTTTAGAGCGCACTACATTCACAGCTGATTATCAGTCAG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TTGGCGGAAT | TAAATTA | TAAAAGATTT | 7 |
DNA sequence
TAGGTATAGGCGTTTAGTGCGCACTAACTTTATGGATTTTGCCTACTTTTGCAGGCATGGAACAACGCGATAAATTCAAAGGAGTGGAATCAATCAAATT
TTATAGTCGTTTTACCGATGATGCCTCATGCCTTGAGTACTTGTCCTCGATAAAGTGGGCAGACGGCTTCAAATGCAAGAAATGCGGTCATACCAATTAT
TGCAATGACAGATATCCCTATTCTCGCCGTTGTACACGCTGTAAGTATGACGAGAGCGTTACCAGCGGAAGCATGTTCGACAAGATAAAATTCCCGCTTG
TCTACGCTTTCCACATAGCCTTCAAAATATCGACAAAGAAGAAAGGGATGTCCTCTTTGGAACTGGCGGAAGAATATTGTATGCGTCAGAAAACCGTATG
GGAATTCAAGCGTAAGATACAGAAAGCCATGCGGAGCAGCGGTAATTATCCTCTTAAAGGAGAGGTACATGTCGATGAGTTTTATATCGGAGGAGAAGAG
GAAGGAATCATTGGACGAAGCACGGAAGGCAAAAAGAAGCTTGTGATAGTCGCTTTGGAGATTGTCCGAGACGGCGTGGGACGTGCGTATGCCCAAGTGA
TAGATGATGCTTCGGCAAGTTCTTTTCGTCCGTTCTTCGACAGATACATATCAAAGGACGCAAAAGTCATAACCGATGAATGGTCAGGCTACCTGCCGTT
AAAGAAAGATTATCCAAAATTGGAGCAACGCCCTTCGGATAAGGGCAAAGGGCATCCACAGATTCATATTCACATCATGAACATAAAGGGATGGTTGCGT
GGAATACACCACCATTGCTCCAAAGAGCATCTTCAAGGATACCTTGACGAGTATCATTTCAGGTTCAACCGCCGTAATAATATGGACACAATCTTCGATA
TGCTACTTCGTCGAATGATTTGTCAAAAGAAAACTGACTGATAATCAGCTGTGAATGTAGTGCGCTCTAAACGCCTATACCTA
TTATAGTCGTTTTACCGATGATGCCTCATGCCTTGAGTACTTGTCCTCGATAAAGTGGGCAGACGGCTTCAAATGCAAGAAATGCGGTCATACCAATTAT
TGCAATGACAGATATCCCTATTCTCGCCGTTGTACACGCTGTAAGTATGACGAGAGCGTTACCAGCGGAAGCATGTTCGACAAGATAAAATTCCCGCTTG
TCTACGCTTTCCACATAGCCTTCAAAATATCGACAAAGAAGAAAGGGATGTCCTCTTTGGAACTGGCGGAAGAATATTGTATGCGTCAGAAAACCGTATG
GGAATTCAAGCGTAAGATACAGAAAGCCATGCGGAGCAGCGGTAATTATCCTCTTAAAGGAGAGGTACATGTCGATGAGTTTTATATCGGAGGAGAAGAG
GAAGGAATCATTGGACGAAGCACGGAAGGCAAAAAGAAGCTTGTGATAGTCGCTTTGGAGATTGTCCGAGACGGCGTGGGACGTGCGTATGCCCAAGTGA
TAGATGATGCTTCGGCAAGTTCTTTTCGTCCGTTCTTCGACAGATACATATCAAAGGACGCAAAAGTCATAACCGATGAATGGTCAGGCTACCTGCCGTT
AAAGAAAGATTATCCAAAATTGGAGCAACGCCCTTCGGATAAGGGCAAAGGGCATCCACAGATTCATATTCACATCATGAACATAAAGGGATGGTTGCGT
GGAATACACCACCATTGCTCCAAAGAGCATCTTCAAGGATACCTTGACGAGTATCATTTCAGGTTCAACCGCCGTAATAATATGGACACAATCTTCGATA
TGCTACTTCGTCGAATGATTTGTCAAAAGAAAACTGACTGATAATCAGCTGTGAATGTAGTGCGCTCTAAACGCCTATACCTA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 885 bp | 294 aa | 57 | 941 | + | No |
Chemistry : DDE
ORF sequence :
MEQRDKFKGVESIKFYSRFTDDASCLEYLSSIKWADGFKCKKCGHTNYCNDRYPYSRRCTRCKYDESVTSGSMFDKIKFPLVYAFHIAFKISTKKKGMSS
LELAEEYCMRQKTVWEFKRKIQKAMRSSGNYPLKGEVHVDEFYIGGEEEGIIGRSTEGKKKLVIVALEIVRDGVGRAYAQVIDDASASSFRPFFDRYISK
DAKVITDEWSGYLPLKKDYPKLEQRPSDKGKGHPQIHIHIMNIKGWLRGIHHHCSKEHLQGYLDEYHFRFNRRNNMDTIFDMLLRRMICQKKTD
LELAEEYCMRQKTVWEFKRKIQKAMRSSGNYPLKGEVHVDEFYIGGEEEGIIGRSTEGKKKLVIVALEIVRDGVGRAYAQVIDDASASSFRPFFDRYISK
DAKVITDEWSGYLPLKKDYPKLEQRPSDKGKGHPQIHIHIMNIKGWLRGIHHHCSKEHLQGYLDEYHFRFNRRNNMDTIFDMLLRRMICQKKTD
Blast result :
Comments
ISPrsp1 is 50% aa similar to ISAar1.
References
1] ISfinder annotation (2009)
2] Ward,D., Young,S.K., Zeng,Q., Koehrsen,M., Alvarado,L., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yandava,C., Allen-Vercoe,E., Strauss,J., Sibley,C., White,A., Ambrose,C., Lander,E., Nusbaum,C., Galagan,J. and Birren,B. (2009) Direct submission GenBank.
2] Ward,D., Young,S.K., Zeng,Q., Koehrsen,M., Alvarado,L., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yandava,C., Allen-Vercoe,E., Strauss,J., Sibley,C., White,A., Ambrose,C., Lander,E., Nusbaum,C., Galagan,J. and Birren,B. (2009) Direct submission GenBank.