ISMpo6
- Family IS1182
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_010725 | ND | Methylobacterium populi | Methylobacterium populi BJ001 |
DNA section
IS Length : 1593 bp
Ends
IR Length : 29/32
IRL : GGTCCGGTTGCCACCGAGGCTGTGTGGAAACGTAGCGGTTCCGATAGTCT
IRR : GGTCCGGTTCCCACCGAGGCTGTGTGAGAACGCGGAGTGTTGGGCCGGTT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AAGGAGACAA | CTGGCTCTTC | 0 |
DNA sequence
GGTCCGGTTGCCACCGAGGCTGTGTGGAAACGTAGCGGTTCCGATAGTCTCTGCGGGAGAGCGGAGGCGTGTATGGCGCGGTTCATCTGTGGTGCGGATC
GCCACCAAGTCACGCTGTTGCCGAACCGGTTGGACGACTATGTGTCCAAAGACAATCCGGTGCGCGTCGTCGACCTGTTCGTAGACGAGCTTGATCTCAC
GGCCCTGGGCTTTGCGAGCATGATGCCGGCCGCGACCGGACGGCCCGGGTACCATCCCGCGACGCTGCTGAAGCTCTATCTCTACGGTTACCTCAACCAA
GTCACCTCCAGCCGCCGTCTGGAGCGTGAGGCTGGCCGCAACGTCGAGCTGATGTGGCTGACCGGCCGCCTCGCCCCCGACTTCAAGACCATCGCCGACT
TCCGACGCGACAACGGCCCAGCGATCCAGGCCGCCTGCCGCCAGTTCGTGGTCTTGTGCCGACAACTCGGCCTCCTGGCCGGTGGTGTCGTGGCTCTCGA
CGGCAGCCGCTTCAAAGCGGTCAACGCGCGTGATCGCAACTTCACCCCAGCGGCGGTCCAGCGCCGCATCGAGCAGATCGAGGCCAGCATCGCGCGCTAT
CTCGCCGCCCTCGACACCGCCGATCGCCAGGAGGACGAGGTCGCCCACGTGCGCAAGGTGCGCATCGCGGAGCGTCTGGACGCCCTGCGGACGCGGATGC
GCGAACTGCAGGCAATGGAGACGCTCGTCGAAGCCGCCCCCGACCGGCAGATCTCGCTGACCGATCCGGACGCGCGGGCGATGGCCACGCGCGGCAAGGG
GACGGGGATGGTCGGCTACAACGTGCAGGCGGTCGTCGACACCGCGCATCATCTGATCGTCGCCCACGCGGTCACCAACGTCGGGCACGACCGCACCCAA
CTGGCGCACATGAGCTGCCAGGGCCAAGCAGCGACCGGGCATGAGGCGCTCACCGTGCTGGCTGACCGCGGCTACTTCTCGGGCGAGGAGATCCTGGCCT
GTGATCAGGCCGGCATTGCGGTGACGTTGCCCAAGCCGCTGACCTCGGGTGCCAAGGCGGAGGGGCGCTTCGGCAAGCAGGACTTCGTCTACGAGGCGGA
GGCGGACGCCTACCGGTGTCCGGCCGGCGAGCAGCTCTCCTACCGCTACACGAATGTCGAGGGTGGGCTGACGCTACGCCGTTACTGGACGACAGCCTGC
CACGGCTGCGCGCTCAAGGCGCGCTGCACGCCGGCCAAGGAGCGGCGCGTGACGCGGTGGGAGCACGAGGCCGTCTTGGAAGCCGTGCAGCGGCGGCTCG
ATGCGGATCCTCATGCGATGCGCACGCGGCGCCAGACGGTCGAGCACGTGTTCGGGACGCTCAAGGGCTGGATGGGCGCGACGCACTTCCGGATGCGCCG
GTTGAGAAACGTGGCGACCGAGATGAGCTTGCAGGTCCTGGCCTACAATCTGAAGCGGGTGATGGCGATCCTCGGCACTGGACCACTCCTCAGCGCTCTC
CGAGCGTGACAGCACGCGGCACCGCGCGCTGTCATCGACTCCGAACCGGCCCAACACTCCGCGTTCTCACACAGCCTCGGTGGGAACCGGACC
GCCACCAAGTCACGCTGTTGCCGAACCGGTTGGACGACTATGTGTCCAAAGACAATCCGGTGCGCGTCGTCGACCTGTTCGTAGACGAGCTTGATCTCAC
GGCCCTGGGCTTTGCGAGCATGATGCCGGCCGCGACCGGACGGCCCGGGTACCATCCCGCGACGCTGCTGAAGCTCTATCTCTACGGTTACCTCAACCAA
GTCACCTCCAGCCGCCGTCTGGAGCGTGAGGCTGGCCGCAACGTCGAGCTGATGTGGCTGACCGGCCGCCTCGCCCCCGACTTCAAGACCATCGCCGACT
TCCGACGCGACAACGGCCCAGCGATCCAGGCCGCCTGCCGCCAGTTCGTGGTCTTGTGCCGACAACTCGGCCTCCTGGCCGGTGGTGTCGTGGCTCTCGA
CGGCAGCCGCTTCAAAGCGGTCAACGCGCGTGATCGCAACTTCACCCCAGCGGCGGTCCAGCGCCGCATCGAGCAGATCGAGGCCAGCATCGCGCGCTAT
CTCGCCGCCCTCGACACCGCCGATCGCCAGGAGGACGAGGTCGCCCACGTGCGCAAGGTGCGCATCGCGGAGCGTCTGGACGCCCTGCGGACGCGGATGC
GCGAACTGCAGGCAATGGAGACGCTCGTCGAAGCCGCCCCCGACCGGCAGATCTCGCTGACCGATCCGGACGCGCGGGCGATGGCCACGCGCGGCAAGGG
GACGGGGATGGTCGGCTACAACGTGCAGGCGGTCGTCGACACCGCGCATCATCTGATCGTCGCCCACGCGGTCACCAACGTCGGGCACGACCGCACCCAA
CTGGCGCACATGAGCTGCCAGGGCCAAGCAGCGACCGGGCATGAGGCGCTCACCGTGCTGGCTGACCGCGGCTACTTCTCGGGCGAGGAGATCCTGGCCT
GTGATCAGGCCGGCATTGCGGTGACGTTGCCCAAGCCGCTGACCTCGGGTGCCAAGGCGGAGGGGCGCTTCGGCAAGCAGGACTTCGTCTACGAGGCGGA
GGCGGACGCCTACCGGTGTCCGGCCGGCGAGCAGCTCTCCTACCGCTACACGAATGTCGAGGGTGGGCTGACGCTACGCCGTTACTGGACGACAGCCTGC
CACGGCTGCGCGCTCAAGGCGCGCTGCACGCCGGCCAAGGAGCGGCGCGTGACGCGGTGGGAGCACGAGGCCGTCTTGGAAGCCGTGCAGCGGCGGCTCG
ATGCGGATCCTCATGCGATGCGCACGCGGCGCCAGACGGTCGAGCACGTGTTCGGGACGCTCAAGGGCTGGATGGGCGCGACGCACTTCCGGATGCGCCG
GTTGAGAAACGTGGCGACCGAGATGAGCTTGCAGGTCCTGGCCTACAATCTGAAGCGGGTGATGGCGATCCTCGGCACTGGACCACTCCTCAGCGCTCTC
CGAGCGTGACAGCACGCGGCACCGCGCGCTGTCATCGACTCCGAACCGGCCCAACACTCCGCGTTCTCACACAGCCTCGGTGGGAACCGGACC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1437 bp | 478 aa | 73 | 1509 | + | No |
Chemistry : DDE
ORF sequence :
MARFICGADRHQVTLLPNRLDDYVSKDNPVRVVDLFVDELDLTALGFASMMPAATGRPGYHPATLLKLYLYGYLNQVTSSRRLEREAGRNVELMWLTGRL
APDFKTIADFRRDNGPAIQAACRQFVVLCRQLGLLAGGVVALDGSRFKAVNARDRNFTPAAVQRRIEQIEASIARYLAALDTADRQEDEVAHVRKVRIAE
RLDALRTRMRELQAMETLVEAAPDRQISLTDPDARAMATRGKGTGMVGYNVQAVVDTAHHLIVAHAVTNVGHDRTQLAHMSCQGQAATGHEALTVLADRG
YFSGEEILACDQAGIAVTLPKPLTSGAKAEGRFGKQDFVYEAEADAYRCPAGEQLSYRYTNVEGGLTLRRYWTTACHGCALKARCTPAKERRVTRWEHEA
VLEAVQRRLDADPHAMRTRRQTVEHVFGTLKGWMGATHFRMRRLRNVATEMSLQVLAYNLKRVMAILGTGPLLSALRA
APDFKTIADFRRDNGPAIQAACRQFVVLCRQLGLLAGGVVALDGSRFKAVNARDRNFTPAAVQRRIEQIEASIARYLAALDTADRQEDEVAHVRKVRIAE
RLDALRTRMRELQAMETLVEAAPDRQISLTDPDARAMATRGKGTGMVGYNVQAVVDTAHHLIVAHAVTNVGHDRTQLAHMSCQGQAATGHEALTVLADRG
YFSGEEILACDQAGIAVTLPKPLTSGAKAEGRFGKQDFVYEAEADAYRCPAGEQLSYRYTNVEGGLTLRRYWTTACHGCALKARCTPAKERRVTRWEHEA
VLEAVQRRLDADPHAMRTRRQTVEHVFGTLKGWMGATHFRMRRLRNVATEMSLQVLAYNLKRVMAILGTGPLLSALRA
Blast result :
Comments
ISMpo6 is 78% aa similar to ISCc5.
References
1] Ming-Chun Lee and David Robinson (2009) Direct submission.
2] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Kuske,C.R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Marx,C. and Richardson,P. (2008) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Kuske,C.R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Marx,C. and Richardson,P. (2008) Direct submission GenBank.