ISArma2
- Family IS1
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_ABYK01000023 | ND | Arthrospira maxima | Arthrospira maxima CS-328 |
DNA section
IS Length : 744 bp
Ends
IR Length : 16/23
IRL : GGTGTTGCATAATAGAAAATGATATTCTCAAATAAATCAAGATGGATTGT
IRR : GGTATTGCACAGTGAGGAATGATTAAGAGAACGGAGGAAGTTGTCCATGC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AGACGGCACT | CGATAATT | CCAACGCTGT | 8 |
DNA sequence
GGTGTTGCATAATAGAAAATGATATTCTCAAATAAATCAAGATGGATTGTCCTTATTGCCAAAGCCATAAAGTAGTCAAAAATGGTCATCGTCAGGGAAA
ACAGAGTTACCTGTGCCGTGAATGTGGTCGCCAATTTCGAGAAAATCCCTGTCCTGGAGGTTACAGTTCTGATGTCAAAGAGCTTTGTGTGAAAATTTCC
CTCAATGGCATGGGATTTCGAGCCATTGAGAGAGTCACTGGTATTTCTCACAACACAATACTTAACTGGGTTAGAGTTGCAGAAACCCACATTGATGAGG
AAAACTATGAAATTCCTGAAATAGCTCAAATTGATGAGCTTCAGACTTTTGTGGGTTCAAAAAAAACCATCTGGGTCTGGACAGTTGTGAATACCAAACT
GCCTGGCATTCTGAAGTTTGTCATAGGCGACCGCTCATTGCTGACTTTTACCACATTATGGCAAATGATTCAGGGCTGGGCTGGTTTTCTATATATTACG
GACGGATACAAAGTTTATCCTTGCTTAATTGAGGATTGCAATCATCTAGTCAGCAAAACGGCTATGACAAGAGTAGAAGGAGAAAACTGCCGTCTGAGGC
ACTATTTAGCCAGGCTACATCGCAAAACTTTGTGTGATTCCAAGTCCACTGAGATGTTGTACAAATCAATTCGCTTACTTATCTATTATTTGAAGCATGG
ACAACTTCCTCCGTTCTCTTAATCATTCCTCACTGTGCAATACC
ACAGAGTTACCTGTGCCGTGAATGTGGTCGCCAATTTCGAGAAAATCCCTGTCCTGGAGGTTACAGTTCTGATGTCAAAGAGCTTTGTGTGAAAATTTCC
CTCAATGGCATGGGATTTCGAGCCATTGAGAGAGTCACTGGTATTTCTCACAACACAATACTTAACTGGGTTAGAGTTGCAGAAACCCACATTGATGAGG
AAAACTATGAAATTCCTGAAATAGCTCAAATTGATGAGCTTCAGACTTTTGTGGGTTCAAAAAAAACCATCTGGGTCTGGACAGTTGTGAATACCAAACT
GCCTGGCATTCTGAAGTTTGTCATAGGCGACCGCTCATTGCTGACTTTTACCACATTATGGCAAATGATTCAGGGCTGGGCTGGTTTTCTATATATTACG
GACGGATACAAAGTTTATCCTTGCTTAATTGAGGATTGCAATCATCTAGTCAGCAAAACGGCTATGACAAGAGTAGAAGGAGAAAACTGCCGTCTGAGGC
ACTATTTAGCCAGGCTACATCGCAAAACTTTGTGTGATTCCAAGTCCACTGAGATGTTGTACAAATCAATTCGCTTACTTATCTATTATTTGAAGCATGG
ACAACTTCCTCCGTTCTCTTAATCATTCCTCACTGTGCAATACC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 681 bp | 226 aa | 42 | 722 | + | No |
Chemistry : DDE
ORF sequence :
MDCPYCQSHKVVKNGHRQGKQSYLCRECGRQFRENPCPGGYSSDVKELCVKISLNGMGFRAIERVTGISHNTILNWVRVAETHIDEENYEIPEIAQIDEL
QTFVGSKKTIWVWTVVNTKLPGILKFVIGDRSLLTFTTLWQMIQGWAGFLYITDGYKVYPCLIEDCNHLVSKTAMTRVEGENCRLRHYLARLHRKTLCDS
KSTEMLYKSIRLLIYYLKHGQLPPFS
QTFVGSKKTIWVWTVVNTKLPGILKFVIGDRSLLTFTTLWQMIQGWAGFLYITDGYKVYPCLIEDCNHLVSKTAMTRVEGENCRLRHYLARLHRKTLCDS
KSTEMLYKSIRLLIYYLKHGQLPPFS
Blast result :
Comments
ISArma2 is 97% aa similar to ISAtsp6.
References
1] ISfinder annotation (2009)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Larimer,F., Land,M.L., Hauser,L. and Bryant,D.A. (2008) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Larimer,F., Land,M.L., Hauser,L. and Bryant,D.A. (2008) Direct submission GenBank.