ISShwo3

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010506 ND Shewanella woodyi
Shewanella woodyi MS-32
DNA section
IS Length : 1205 bp

Ends


Left end : CTTGTATGGATAATAAACTCACCTAATTTACAAATACTTCCCTGTTTCGGGTAATGTGAGACCCAGGCTTTAGCTGCAACTAAAGCTTTCCTTGTCGTAG
Right end : CTGTATCAGGAAGATGGTTGTAACGTTAAACTCGATGCTAAGAGATGGTGTTATGTGGGAAGCGCCAAAAGCTCAAATTTAGCTATTGACGCCATAGTCT

Insertion site


Left flankDirect repeatRight flankDR Length
TCTTGAGCGCGGAAGTTAAT0
CATTAGGCTTACGCTGATTG0
ACTTAATGCGTATGCCGATT0

DNA sequence

CTTGTATGGATAATAAACTCACCTAATTTACAAATACTTCCCTGTTTCGGGTAATGTGAGACCCAGGCTTTAGCTGCAACTAAAGCTTTCCTTGTCGTAG
TTCGATTGAGCGATGGCTCCTCTATTGAGAGACCGATAACAAGAAAGAACGCGACAAAGGACTCCAAGCAAAACACTCGAATAGTCTACTGGGTCTCGAA
CCCGCATTTGCAAGCAAGAGTTAGCTTATTATGAATTCAAAAACTAATCAAAACATTAGCGTAGGTGTCGATACTGGCAAGTTTCAGCTCGACATTTATA
TTCGGCCACTCGATATCTTTTTCACCGTTAAAAACGATGAGAAAGGGATTAAGGATGCGGTAAACAGCATTAAACAATACACACCAAAACGTATTGTTAT
TGAAGCGACAGGTCGCCTAGAAATGCCATTTATCATGGCCTGTGCTGAAGCCAATCTACCCTTCGTTATCGCCAACCCTATACACATAAAACGTTTTGCT
GGCGCGATTGGTCAACGCGCAAAAACAGACAAATTAGACGCTAAACTTATCGCTCATTATGGTGAAGCAATTAAACCTAAGCTATCTACTTTAAAGCCCA
GCATCATGCAGGCTATGAGCGATTTGGTTTCAAGGCGTAACCAAATTTTGGCAATGCAAACTATGGAGAAAAACCGCCTTCAAATTCTGCCTAAAGACCT
AGCAATGACAATAAAACCTATCTTAACAGCCTTTAAAAATCAGATAGAAAAGATTGAAGCTAAAATCATTAAACTCATCGAGTCATGCCCTGACTATCAA
GCCAAAAACATCATTCTACAAAGCATGAAAGGGATAGGTAAAATAGCCGCAGCTTCTATTATTAGTAATCTCCCTGAACTCGGATATATCAATAACAAAG
AAGCAAGTTCACTGGTTGGTGTTGCACCAATGAATAAGGAAAGTGGCCGTTTCAAAGGCCAAAGAAAAATTCAAGGAGGAAGGCATCAAGTCAGAACAGT
TTTATACATGGCTATGATGTCTGCAATTCAGTCTAACCCAGTTTTCAAACAAACTTATCAGCGATTAGTCGCTGCTGGAAAACCGAAAAAAGTGGCGATA
ATTGCCTGTATCAGGAAGATGGTTGTAACGTTAAACTCGATGCTAAGAGATGGTGTTATGTGGGAAGCGCCAAAAGCTCAAATTTAGCTATTGACGCCAT
AGTCT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
957 bp318 aa2311187+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MNSKTNQNISVGVDTGKFQLDIYIRPLDIFFTVKNDEKGIKDAVNSIKQYTPKRIVIEATGRLEMPFIMACAEANLPFVIANPIHIKRFAGAIGQRAKTD
KLDAKLIAHYGEAIKPKLSTLKPSIMQAMSDLVSRRNQILAMQTMEKNRLQILPKDLAMTIKPILTAFKNQIEKIEAKIIKLIESCPDYQAKNIILQSMK
GIGKIAAASIISNLPELGYINNKEASSLVGVAPMNKESGRFKGQRKIQGGRHQVRTVLYMAMMSAIQSNPVFKQTYQRLVAAGKPKKVAIIACIRKMVVT
LNSMLRDGVMWEAPKAQI

 

Blast result :
Comments
The ISShwo3 transposase has 88% identity to ISSpi5_aa1. There are 3 full length copies encoded in the S. woodyi MS-32 genome.
References
1] Romine, M. (2009) Direct submission.