ISShwo3
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010506 | ND | Shewanella woodyi | Shewanella woodyi MS-32 |
DNA section
IS Length : 1205 bp
Ends
Left end : CTTGTATGGATAATAAACTCACCTAATTTACAAATACTTCCCTGTTTCGGGTAATGTGAGACCCAGGCTTTAGCTGCAACTAAAGCTTTCCTTGTCGTAG
Right end : CTGTATCAGGAAGATGGTTGTAACGTTAAACTCGATGCTAAGAGATGGTGTTATGTGGGAAGCGCCAAAAGCTCAAATTTAGCTATTGACGCCATAGTCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCTTGAGCGC | GGAAGTTAAT | 0 | |
CATTAGGCTT | ACGCTGATTG | 0 | |
ACTTAATGCG | TATGCCGATT | 0 |
DNA sequence
CTTGTATGGATAATAAACTCACCTAATTTACAAATACTTCCCTGTTTCGGGTAATGTGAGACCCAGGCTTTAGCTGCAACTAAAGCTTTCCTTGTCGTAG
TTCGATTGAGCGATGGCTCCTCTATTGAGAGACCGATAACAAGAAAGAACGCGACAAAGGACTCCAAGCAAAACACTCGAATAGTCTACTGGGTCTCGAA
CCCGCATTTGCAAGCAAGAGTTAGCTTATTATGAATTCAAAAACTAATCAAAACATTAGCGTAGGTGTCGATACTGGCAAGTTTCAGCTCGACATTTATA
TTCGGCCACTCGATATCTTTTTCACCGTTAAAAACGATGAGAAAGGGATTAAGGATGCGGTAAACAGCATTAAACAATACACACCAAAACGTATTGTTAT
TGAAGCGACAGGTCGCCTAGAAATGCCATTTATCATGGCCTGTGCTGAAGCCAATCTACCCTTCGTTATCGCCAACCCTATACACATAAAACGTTTTGCT
GGCGCGATTGGTCAACGCGCAAAAACAGACAAATTAGACGCTAAACTTATCGCTCATTATGGTGAAGCAATTAAACCTAAGCTATCTACTTTAAAGCCCA
GCATCATGCAGGCTATGAGCGATTTGGTTTCAAGGCGTAACCAAATTTTGGCAATGCAAACTATGGAGAAAAACCGCCTTCAAATTCTGCCTAAAGACCT
AGCAATGACAATAAAACCTATCTTAACAGCCTTTAAAAATCAGATAGAAAAGATTGAAGCTAAAATCATTAAACTCATCGAGTCATGCCCTGACTATCAA
GCCAAAAACATCATTCTACAAAGCATGAAAGGGATAGGTAAAATAGCCGCAGCTTCTATTATTAGTAATCTCCCTGAACTCGGATATATCAATAACAAAG
AAGCAAGTTCACTGGTTGGTGTTGCACCAATGAATAAGGAAAGTGGCCGTTTCAAAGGCCAAAGAAAAATTCAAGGAGGAAGGCATCAAGTCAGAACAGT
TTTATACATGGCTATGATGTCTGCAATTCAGTCTAACCCAGTTTTCAAACAAACTTATCAGCGATTAGTCGCTGCTGGAAAACCGAAAAAAGTGGCGATA
ATTGCCTGTATCAGGAAGATGGTTGTAACGTTAAACTCGATGCTAAGAGATGGTGTTATGTGGGAAGCGCCAAAAGCTCAAATTTAGCTATTGACGCCAT
AGTCT
TTCGATTGAGCGATGGCTCCTCTATTGAGAGACCGATAACAAGAAAGAACGCGACAAAGGACTCCAAGCAAAACACTCGAATAGTCTACTGGGTCTCGAA
CCCGCATTTGCAAGCAAGAGTTAGCTTATTATGAATTCAAAAACTAATCAAAACATTAGCGTAGGTGTCGATACTGGCAAGTTTCAGCTCGACATTTATA
TTCGGCCACTCGATATCTTTTTCACCGTTAAAAACGATGAGAAAGGGATTAAGGATGCGGTAAACAGCATTAAACAATACACACCAAAACGTATTGTTAT
TGAAGCGACAGGTCGCCTAGAAATGCCATTTATCATGGCCTGTGCTGAAGCCAATCTACCCTTCGTTATCGCCAACCCTATACACATAAAACGTTTTGCT
GGCGCGATTGGTCAACGCGCAAAAACAGACAAATTAGACGCTAAACTTATCGCTCATTATGGTGAAGCAATTAAACCTAAGCTATCTACTTTAAAGCCCA
GCATCATGCAGGCTATGAGCGATTTGGTTTCAAGGCGTAACCAAATTTTGGCAATGCAAACTATGGAGAAAAACCGCCTTCAAATTCTGCCTAAAGACCT
AGCAATGACAATAAAACCTATCTTAACAGCCTTTAAAAATCAGATAGAAAAGATTGAAGCTAAAATCATTAAACTCATCGAGTCATGCCCTGACTATCAA
GCCAAAAACATCATTCTACAAAGCATGAAAGGGATAGGTAAAATAGCCGCAGCTTCTATTATTAGTAATCTCCCTGAACTCGGATATATCAATAACAAAG
AAGCAAGTTCACTGGTTGGTGTTGCACCAATGAATAAGGAAAGTGGCCGTTTCAAAGGCCAAAGAAAAATTCAAGGAGGAAGGCATCAAGTCAGAACAGT
TTTATACATGGCTATGATGTCTGCAATTCAGTCTAACCCAGTTTTCAAACAAACTTATCAGCGATTAGTCGCTGCTGGAAAACCGAAAAAAGTGGCGATA
ATTGCCTGTATCAGGAAGATGGTTGTAACGTTAAACTCGATGCTAAGAGATGGTGTTATGTGGGAAGCGCCAAAAGCTCAAATTTAGCTATTGACGCCAT
AGTCT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
957 bp | 318 aa | 231 | 1187 | + | No |
Chemistry : DEDD
ORF sequence :
MNSKTNQNISVGVDTGKFQLDIYIRPLDIFFTVKNDEKGIKDAVNSIKQYTPKRIVIEATGRLEMPFIMACAEANLPFVIANPIHIKRFAGAIGQRAKTD
KLDAKLIAHYGEAIKPKLSTLKPSIMQAMSDLVSRRNQILAMQTMEKNRLQILPKDLAMTIKPILTAFKNQIEKIEAKIIKLIESCPDYQAKNIILQSMK
GIGKIAAASIISNLPELGYINNKEASSLVGVAPMNKESGRFKGQRKIQGGRHQVRTVLYMAMMSAIQSNPVFKQTYQRLVAAGKPKKVAIIACIRKMVVT
LNSMLRDGVMWEAPKAQI
KLDAKLIAHYGEAIKPKLSTLKPSIMQAMSDLVSRRNQILAMQTMEKNRLQILPKDLAMTIKPILTAFKNQIEKIEAKIIKLIESCPDYQAKNIILQSMK
GIGKIAAASIISNLPELGYINNKEASSLVGVAPMNKESGRFKGQRKIQGGRHQVRTVLYMAMMSAIQSNPVFKQTYQRLVAAGKPKKVAIIACIRKMVVT
LNSMLRDGVMWEAPKAQI
Blast result :
Comments
The ISShwo3 transposase has 88% identity to ISSpi5_aa1. There are 3 full length copies encoded in the S. woodyi MS-32 genome.
References
1] Romine, M. (2009) Direct submission.