ISPfr17
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Propionibacterium freudenreichii | Propionibacterium freudenreichii |
DNA section
IS Length : 1092 bp
Ends
IR Length : 24/26
IRL : TGTACTTCCCCGGGAGGTTGTGAACGGGTGAGGTAGCGAAGACCTCCGGG
IRR : TGTACTTCCCCGTGACGTTGTGAACGCGGGCTGAGGGAGTCTGGCCGCCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATGGACGCAT | TCTAGC | TCGCCCCTGA | 6 |
TGACCGGCGA | GCTAA/GC | GCGGCATCGA | 6 |
DNA sequence
TGTACTTCCCCGGGAGGTTGTGAACGGGTGAGGTAGCGAAGACCTCCGGGCAGGATGTGGTTACCACACTCACTCTCCTGACCACGGAGGTCTTCGTGAC
TCACGCTAACGCACCCTTGACACCGGAAGGGCGTCGTCGTCTTGCTGTTCTCGTCGTGGAACAGGGCTGGTCGTTGCGGCGGGCGGCGGAACGGTTCCAG
TGCTCGCCCGCGACGGTGAAGCGGTGGGCCGACAGGTACCGGGCAGGGCTGCCGTTGATCGACCGTAGTTTGAGGCCCACCTCGTCACCGAACCGGCTTT
CGCGTAAGACGGAGCATCGGATCGTCGCGTTGCGGTTCACTCGCCGGTGGGGTCCGCACCGGATCGCGTATCACCTGCGGTTGCACCGTTCCACGGTCGG
TCGGGTGCTCGCCCGATACAAGATGCCGAAGCTGATCAACATCGACCAGGCCACCGGGCTGCCGGTTCGCCGCCCGAAGCCGACACGGTACGAGGTCGCC
GCGCCGGGCGAGCTCGTGCACGTAGATATCAAGAAACAAGGCCGGATCCCCGACGGCGGCGGGTGGCGTGCCCACGGTCGCGGATCCATGCAGGACCGTC
ACGCGGGAGTGGCCCGCGACAAGGCAGCCCGTGCCGGGGCAGCCGGCTCTCGCGGCTACCGGTATCTGCACCACGCCGTGGACGACCACTCCCGGATCGC
GTACTCAGAGATCCTTGACGACGAGCGCAAAGAGACCGCAGCGGGGTTCTGGACCCGCGCGAACGCGTTCTTCGCAGGCCTGGGCGTCACAGTCACCGCG
GTGATGACCGACAACGGTTCCTGCTACCGGTCAGGCGCCTTCGCTGACGCGCTCGGCGACGAGGTGAAGCACAAGTGGACCCGGCCATACCGGCCGCAGA
CCAACGGCAAGGTCGAGCGGTTCAACCGAACCCTCGCCGTCGAGTGGGCCTACGCGAAGCCCTACGCCAGCGAAGCCGAGCGCGCCGCAGCCTACGAGAC
CTGGCTCCATCACTACAATCACCACAGACCCCACACCGGGATCGGCGGCCAGACTCCCTCAGCCCGCGTTCACAACGTCACGGGGAAGTACA
TCACGCTAACGCACCCTTGACACCGGAAGGGCGTCGTCGTCTTGCTGTTCTCGTCGTGGAACAGGGCTGGTCGTTGCGGCGGGCGGCGGAACGGTTCCAG
TGCTCGCCCGCGACGGTGAAGCGGTGGGCCGACAGGTACCGGGCAGGGCTGCCGTTGATCGACCGTAGTTTGAGGCCCACCTCGTCACCGAACCGGCTTT
CGCGTAAGACGGAGCATCGGATCGTCGCGTTGCGGTTCACTCGCCGGTGGGGTCCGCACCGGATCGCGTATCACCTGCGGTTGCACCGTTCCACGGTCGG
TCGGGTGCTCGCCCGATACAAGATGCCGAAGCTGATCAACATCGACCAGGCCACCGGGCTGCCGGTTCGCCGCCCGAAGCCGACACGGTACGAGGTCGCC
GCGCCGGGCGAGCTCGTGCACGTAGATATCAAGAAACAAGGCCGGATCCCCGACGGCGGCGGGTGGCGTGCCCACGGTCGCGGATCCATGCAGGACCGTC
ACGCGGGAGTGGCCCGCGACAAGGCAGCCCGTGCCGGGGCAGCCGGCTCTCGCGGCTACCGGTATCTGCACCACGCCGTGGACGACCACTCCCGGATCGC
GTACTCAGAGATCCTTGACGACGAGCGCAAAGAGACCGCAGCGGGGTTCTGGACCCGCGCGAACGCGTTCTTCGCAGGCCTGGGCGTCACAGTCACCGCG
GTGATGACCGACAACGGTTCCTGCTACCGGTCAGGCGCCTTCGCTGACGCGCTCGGCGACGAGGTGAAGCACAAGTGGACCCGGCCATACCGGCCGCAGA
CCAACGGCAAGGTCGAGCGGTTCAACCGAACCCTCGCCGTCGAGTGGGCCTACGCGAAGCCCTACGCCAGCGAAGCCGAGCGCGCCGCAGCCTACGAGAC
CTGGCTCCATCACTACAATCACCACAGACCCCACACCGGGATCGGCGGCCAGACTCCCTCAGCCCGCGTTCACAACGTCACGGGGAAGTACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1038 bp | 346 aa | 57 | 1094 | + | No |
Chemistry : DDE
ORF sequence :
MVTTLTLLTTEVFVTHANAPLTPEGRRRLAVLVVEQGWSLRRAAERFQCSPATVKRWADRYRAGLPLIDRSLRPTSSPNRLSRKTEHRIVALRFTRRWGP
HRIAYHLRLHRSTVGRVLARYKMPKLINIDQATGLPVRRPKPTRYEVAAPGELVHVDIKKQGRIPDGGGWRAHGRGSMQDRHAGVARDKAARAGAAGSRG
YRYLHHAVDDHSRIAYSEILDDERKETAAGFWTRANAFFAGLGVTVTAVMTDNGSCYRSGAFADALGDEVKHKWTRPYRPQTNGKVERFNRTLAVEWAYA
KPYASEAERAAAYETWLHHYNHHRPHTGIGGQTPSARVHNVTGKYI
HRIAYHLRLHRSTVGRVLARYKMPKLINIDQATGLPVRRPKPTRYEVAAPGELVHVDIKKQGRIPDGGGWRAHGRGSMQDRHAGVARDKAARAGAAGSRG
YRYLHHAVDDHSRIAYSEILDDERKETAAGFWTRANAFFAGLGVTVTAVMTDNGSCYRSGAFADALGDEVKHKWTRPYRPQTNGKVERFNRTLAVEWAYA
KPYASEAERAAAYETWLHHYNHHRPHTGIGGQTPSARVHNVTGKYI
Blast result :
Comments
ISPfr17 is 82% aa similar to ISPfr15. The STOP codon is in the insertion site (DR).
References
1] ISfinder annotation (2009)