ISPfr17

  • Family IS481
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Propionibacterium freudenreichii
Propionibacterium freudenreichii
DNA section
IS Length : 1092 bp

Ends


IR Length : 24/26

IRL : TGTACTTCCCCGGGAGGTTGTGAACGGGTGAGGTAGCGAAGACCTCCGGG
IRR : TGTACTTCCCCGTGACGTTGTGAACGCGGGCTGAGGGAGTCTGGCCGCCG

Insertion site


Left flankDirect repeatRight flankDR Length
ATGGACGCATTCTAGCTCGCCCCTGA6
TGACCGGCGAGCTAA/GCGCGGCATCGA6

DNA sequence

TGTACTTCCCCGGGAGGTTGTGAACGGGTGAGGTAGCGAAGACCTCCGGGCAGGATGTGGTTACCACACTCACTCTCCTGACCACGGAGGTCTTCGTGAC
TCACGCTAACGCACCCTTGACACCGGAAGGGCGTCGTCGTCTTGCTGTTCTCGTCGTGGAACAGGGCTGGTCGTTGCGGCGGGCGGCGGAACGGTTCCAG
TGCTCGCCCGCGACGGTGAAGCGGTGGGCCGACAGGTACCGGGCAGGGCTGCCGTTGATCGACCGTAGTTTGAGGCCCACCTCGTCACCGAACCGGCTTT
CGCGTAAGACGGAGCATCGGATCGTCGCGTTGCGGTTCACTCGCCGGTGGGGTCCGCACCGGATCGCGTATCACCTGCGGTTGCACCGTTCCACGGTCGG
TCGGGTGCTCGCCCGATACAAGATGCCGAAGCTGATCAACATCGACCAGGCCACCGGGCTGCCGGTTCGCCGCCCGAAGCCGACACGGTACGAGGTCGCC
GCGCCGGGCGAGCTCGTGCACGTAGATATCAAGAAACAAGGCCGGATCCCCGACGGCGGCGGGTGGCGTGCCCACGGTCGCGGATCCATGCAGGACCGTC
ACGCGGGAGTGGCCCGCGACAAGGCAGCCCGTGCCGGGGCAGCCGGCTCTCGCGGCTACCGGTATCTGCACCACGCCGTGGACGACCACTCCCGGATCGC
GTACTCAGAGATCCTTGACGACGAGCGCAAAGAGACCGCAGCGGGGTTCTGGACCCGCGCGAACGCGTTCTTCGCAGGCCTGGGCGTCACAGTCACCGCG
GTGATGACCGACAACGGTTCCTGCTACCGGTCAGGCGCCTTCGCTGACGCGCTCGGCGACGAGGTGAAGCACAAGTGGACCCGGCCATACCGGCCGCAGA
CCAACGGCAAGGTCGAGCGGTTCAACCGAACCCTCGCCGTCGAGTGGGCCTACGCGAAGCCCTACGCCAGCGAAGCCGAGCGCGCCGCAGCCTACGAGAC
CTGGCTCCATCACTACAATCACCACAGACCCCACACCGGGATCGGCGGCCAGACTCCCTCAGCCCGCGTTCACAACGTCACGGGGAAGTACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1038 bp346 aa571094+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MVTTLTLLTTEVFVTHANAPLTPEGRRRLAVLVVEQGWSLRRAAERFQCSPATVKRWADRYRAGLPLIDRSLRPTSSPNRLSRKTEHRIVALRFTRRWGP
HRIAYHLRLHRSTVGRVLARYKMPKLINIDQATGLPVRRPKPTRYEVAAPGELVHVDIKKQGRIPDGGGWRAHGRGSMQDRHAGVARDKAARAGAAGSRG
YRYLHHAVDDHSRIAYSEILDDERKETAAGFWTRANAFFAGLGVTVTAVMTDNGSCYRSGAFADALGDEVKHKWTRPYRPQTNGKVERFNRTLAVEWAYA
KPYASEAERAAAYETWLHHYNHHRPHTGIGGQTPSARVHNVTGKYI

 

Blast result :
Comments
ISPfr17 is 82% aa similar to ISPfr15. The STOP codon is in the insertion site (DR).
References
1] ISfinder annotation (2009)