ISPfr15
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Propionibacterium freudenreichii | Propionibacterium freudenreichii |
DNA section
IS Length : 1097 bp
Ends
IR Length : 25/26
IRL : TGTACTTCCCCGGGACGTTGTGAACAGTTGAGCTGAGGGGGGAGGCCTCC
IRR : TGTACTTCCCCGTGAGGTTGTGAACACGTTCTGAGGGGGTCTGGCCGCCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CAGTCCAGCT | CCTAGT | GCTCCGCCCA | 6 |
GCTGGCGGCC | GCTAGC | CGTTCCATCG | 6 |
DNA sequence
TGTACTTCCCCGGGACGTTGTGAACAGTTGAGCTGAGGGGGGAGGCCTCCGGCAGGATGTGGGTTACCACACACGCATCCAGGAACCGGAGGCCTCCGTG
ACCCACGCTAACGCACCCCTGACCCCCGCTGGAAGGCTCCGGCTGGCCGCCTGCATCGTCGACGACGGCTGGCCCCTGAGACGGGCTGCTGAGCGCTTCC
AGGTGAGTCCGGCCACCGCGAAACGCTGGGCCGATCGCTCTCGTGCCGGCCAGCCGCTGATCGATCACTCCTCCCGGCCTGCTCACAGCCCCAACCGGTT
GTCGCGGAGCACCGAGCACCGGATCGTCGGGCTGCGGTTCACCCGGCGGTGGGGGCCTCATCGGATCGCCTACCACCTGCACATTCCCCGCTCCACCGTG
GGGCGTGTCCTGGAGCGCTACCACATGCCTGTGCTGGCCAACACCGATCAGGCCACGGGCCTGCCCGTGCGCCGCCCCGACCCTGTCCGCTACGAGAAAC
AGGCCCCCGGGGACCTGATCCACGTCGACATCAAGAAGCAGGGCCGTATCCCCGACGGGGGCGGCTGGCGGGCCTTCGGGCGCGGATCGGTCCAGGACCG
AACGGCACGGGCCGCAGGAGACCGCGCCGCGCGGGCGGGCGCGCCCGCATCTCGGGGCTACCGGTATCTTCATCACGCCGTCGACGATCACTCCAGAGTC
GCCTACTCCGAGATCTGTGACGACGAGAAGAAGGAGACCGCTGCGGGGTTCATGACCCGGGCTCTGACCTTCTTCGAATCCATCGGGGTCGCCGTAAAGG
CCGTGATGACCGACAACGGGGCCTGCTACCGGTCCCGGGTCTTCAGCCAGGTCCTCGACGACGCCAAGATCGGTCACAAGTGGACCCGGCCGTACCGGCC
TCAGACCAATGGGAAGGTCGAACGGTTCAACCGGTCCCTGGCCGCCGAGTGGGCCTACGCCCGCGACTACACCAGTGAAACTGAACGCGAAGCGGCCTAC
ACGGAATGGTTGCATCACTACAATCACCACAGACCCCACACCGGTATCGGCGGCCAGACCCCCTCAGAACGTGTTCACAACCTCACGGGGAAGTACA
ACCCACGCTAACGCACCCCTGACCCCCGCTGGAAGGCTCCGGCTGGCCGCCTGCATCGTCGACGACGGCTGGCCCCTGAGACGGGCTGCTGAGCGCTTCC
AGGTGAGTCCGGCCACCGCGAAACGCTGGGCCGATCGCTCTCGTGCCGGCCAGCCGCTGATCGATCACTCCTCCCGGCCTGCTCACAGCCCCAACCGGTT
GTCGCGGAGCACCGAGCACCGGATCGTCGGGCTGCGGTTCACCCGGCGGTGGGGGCCTCATCGGATCGCCTACCACCTGCACATTCCCCGCTCCACCGTG
GGGCGTGTCCTGGAGCGCTACCACATGCCTGTGCTGGCCAACACCGATCAGGCCACGGGCCTGCCCGTGCGCCGCCCCGACCCTGTCCGCTACGAGAAAC
AGGCCCCCGGGGACCTGATCCACGTCGACATCAAGAAGCAGGGCCGTATCCCCGACGGGGGCGGCTGGCGGGCCTTCGGGCGCGGATCGGTCCAGGACCG
AACGGCACGGGCCGCAGGAGACCGCGCCGCGCGGGCGGGCGCGCCCGCATCTCGGGGCTACCGGTATCTTCATCACGCCGTCGACGATCACTCCAGAGTC
GCCTACTCCGAGATCTGTGACGACGAGAAGAAGGAGACCGCTGCGGGGTTCATGACCCGGGCTCTGACCTTCTTCGAATCCATCGGGGTCGCCGTAAAGG
CCGTGATGACCGACAACGGGGCCTGCTACCGGTCCCGGGTCTTCAGCCAGGTCCTCGACGACGCCAAGATCGGTCACAAGTGGACCCGGCCGTACCGGCC
TCAGACCAATGGGAAGGTCGAACGGTTCAACCGGTCCCTGGCCGCCGAGTGGGCCTACGCCCGCGACTACACCAGTGAAACTGAACGCGAAGCGGCCTAC
ACGGAATGGTTGCATCACTACAATCACCACAGACCCCACACCGGTATCGGCGGCCAGACCCCCTCAGAACGTGTTCACAACCTCACGGGGAAGTACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1044 bp | 347 aa | 59 | 1102 | + | No |
Chemistry : DDE
ORF sequence :
MGYHTRIQEPEASVTHANAPLTPAGRLRLAACIVDDGWPLRRAAERFQVSPATAKRWADRSRAGQPLIDHSSRPAHSPNRLSRSTEHRIVGLRFTRRWGP
HRIAYHLHIPRSTVGRVLERYHMPVLANTDQATGLPVRRPDPVRYEKQAPGDLIHVDIKKQGRIPDGGGWRAFGRGSVQDRTARAAGDRAARAGAPASRG
YRYLHHAVDDHSRVAYSEICDDEKKETAAGFMTRALTFFESIGVAVKAVMTDNGACYRSRVFSQVLDDAKIGHKWTRPYRPQTNGKVERFNRSLAAEWAY
ARDYTSETEREAAYTEWLHHYNHHRPHTGIGGQTPSERVHNLTGKYT
HRIAYHLHIPRSTVGRVLERYHMPVLANTDQATGLPVRRPDPVRYEKQAPGDLIHVDIKKQGRIPDGGGWRAFGRGSVQDRTARAAGDRAARAGAPASRG
YRYLHHAVDDHSRVAYSEICDDEKKETAAGFMTRALTFFESIGVAVKAVMTDNGACYRSRVFSQVLDDAKIGHKWTRPYRPQTNGKVERFNRSLAAEWAY
ARDYTSETEREAAYTEWLHHYNHHRPHTGIGGQTPSERVHNLTGKYT
Blast result :
Comments
ISPfr15 is 72% aa similar to ISCmi2. The STOP codon is in the insertion site.
References
1] ISfinder annotation (2009).