ISPfr15

  • Family IS481
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Propionibacterium freudenreichii
Propionibacterium freudenreichii
DNA section
IS Length : 1097 bp

Ends


IR Length : 25/26

IRL : TGTACTTCCCCGGGACGTTGTGAACAGTTGAGCTGAGGGGGGAGGCCTCC
IRR : TGTACTTCCCCGTGAGGTTGTGAACACGTTCTGAGGGGGTCTGGCCGCCG

Insertion site


Left flankDirect repeatRight flankDR Length
CAGTCCAGCTCCTAGTGCTCCGCCCA6
GCTGGCGGCCGCTAGCCGTTCCATCG6

DNA sequence

TGTACTTCCCCGGGACGTTGTGAACAGTTGAGCTGAGGGGGGAGGCCTCCGGCAGGATGTGGGTTACCACACACGCATCCAGGAACCGGAGGCCTCCGTG
ACCCACGCTAACGCACCCCTGACCCCCGCTGGAAGGCTCCGGCTGGCCGCCTGCATCGTCGACGACGGCTGGCCCCTGAGACGGGCTGCTGAGCGCTTCC
AGGTGAGTCCGGCCACCGCGAAACGCTGGGCCGATCGCTCTCGTGCCGGCCAGCCGCTGATCGATCACTCCTCCCGGCCTGCTCACAGCCCCAACCGGTT
GTCGCGGAGCACCGAGCACCGGATCGTCGGGCTGCGGTTCACCCGGCGGTGGGGGCCTCATCGGATCGCCTACCACCTGCACATTCCCCGCTCCACCGTG
GGGCGTGTCCTGGAGCGCTACCACATGCCTGTGCTGGCCAACACCGATCAGGCCACGGGCCTGCCCGTGCGCCGCCCCGACCCTGTCCGCTACGAGAAAC
AGGCCCCCGGGGACCTGATCCACGTCGACATCAAGAAGCAGGGCCGTATCCCCGACGGGGGCGGCTGGCGGGCCTTCGGGCGCGGATCGGTCCAGGACCG
AACGGCACGGGCCGCAGGAGACCGCGCCGCGCGGGCGGGCGCGCCCGCATCTCGGGGCTACCGGTATCTTCATCACGCCGTCGACGATCACTCCAGAGTC
GCCTACTCCGAGATCTGTGACGACGAGAAGAAGGAGACCGCTGCGGGGTTCATGACCCGGGCTCTGACCTTCTTCGAATCCATCGGGGTCGCCGTAAAGG
CCGTGATGACCGACAACGGGGCCTGCTACCGGTCCCGGGTCTTCAGCCAGGTCCTCGACGACGCCAAGATCGGTCACAAGTGGACCCGGCCGTACCGGCC
TCAGACCAATGGGAAGGTCGAACGGTTCAACCGGTCCCTGGCCGCCGAGTGGGCCTACGCCCGCGACTACACCAGTGAAACTGAACGCGAAGCGGCCTAC
ACGGAATGGTTGCATCACTACAATCACCACAGACCCCACACCGGTATCGGCGGCCAGACCCCCTCAGAACGTGTTCACAACCTCACGGGGAAGTACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1044 bp347 aa591102+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MGYHTRIQEPEASVTHANAPLTPAGRLRLAACIVDDGWPLRRAAERFQVSPATAKRWADRSRAGQPLIDHSSRPAHSPNRLSRSTEHRIVGLRFTRRWGP
HRIAYHLHIPRSTVGRVLERYHMPVLANTDQATGLPVRRPDPVRYEKQAPGDLIHVDIKKQGRIPDGGGWRAFGRGSVQDRTARAAGDRAARAGAPASRG
YRYLHHAVDDHSRVAYSEICDDEKKETAAGFMTRALTFFESIGVAVKAVMTDNGACYRSRVFSQVLDDAKIGHKWTRPYRPQTNGKVERFNRSLAAEWAY
ARDYTSETEREAAYTEWLHHYNHHRPHTGIGGQTPSERVHNLTGKYT

 

Blast result :
Comments
ISPfr15 is 72% aa similar to ISCmi2. The STOP codon is in the insertion site.
References
1] ISfinder annotation (2009).