ISPfr1
- Family ISL3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Propionibacterium freudenreichii | Propionibacterium freudenreichii |
DNA section
IS Length : 1427 bp
Ends
IR Length : 27/28
IRL : GGCTCTTCACGAACGAGGGTGTAGCGGGTTGAGCGTGTCGGTGGCCGGGT
IRR : GGCTCTTCACGAACGAGGGTGTAGCGCGGGTCTGAATCCGCCGGCTTCGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGTCGGGGCG | ACTTAAGA | TCGCCGCAGT | 8 |
AGAGATTGAG | CTACTGCTTC | 0 | |
CCGGTTTTCC | ACAAAGCTGG | 0 | |
CTCCGCCGAGCC | CTATATCT/C | GCATTGAGCCTC | 8 |
CCGAAGACGGTG | CTTTATCC | ACACCTATCCTC | 8 |
GATCCTGTTGGC | CCTTGACC | GGGCCCTGCGCT | 8 |
GCGCCTTGTGGC | CCATTCCC | TGCTGGAACGCC | 8 |
GGATACGAAACG | GCTTTCCCCG | 0 | |
CCGGAACGGGGA | GCGAAACC | CCATCCCGGCGT | 8 |
GTGCAGATTTGT | CAACGCGGTC | 0 |
DNA sequence
GGCTCTTCACGAACGAGGGTGTAGCGGGTTGAGCGTGTCGGTGGCCGGGTAGGGGTCGAGGTCTCCCTGAGGATGGAAGTTCTCACACTCGCCATCTGCC
GGAAGACCTCGACGTGTCACACCCTACTTTCACTACACCTTGCCTGACCACGTTCTGCGGTCTCGACGAGCTCGGCCTGGAGGCTGTCGGGCAGCGTCTG
GACCCGGATCGGGCGGTGATCGAGTGCCGTGTCGTGGAGCCGGACCGGTGGTGCCGCGAGTGTGGATGCGAGGGCGCCCCGCGCGACACGGTGATCCGTC
GGCTCGCGCATGAGCCGTTCGGGCATCGGCCCACGACCCTGCTGATCCGGGTCCGGCGCTACAAATGCTGCGGGTGTGGGCGGGTCTGGCGGCAGGACAC
CACGGCCGCCGCGCCGGTACGGGCGAAGATCTCCCGCGGTGGGTTGGCGTGGGGGCTGGCGGGCTTGGTCCTCGATCATCTCTCGGTCACGCGTGTCGCG
GCAGGGCTGGGGGTGTCCTGGTCCGCCGCGAACGACGCGATCCTCGCCGAGGGCCGCCGGCGGCTGATCGATGACCCGGCGCGGTTCGAGGGCGTGACCA
CGATCGGCGTCGACGAGCACGTGTGGCGACACACCCGCCACGGCGACACGTACGTGACCGTGATCATCGACCTGACCCCGGTGCGCGACAAGACCGGCCC
GGCACGGCTGCTGGACATGGTCGCCGGACGCTCGAAAGCCGTGTTCAAGACCTGGCTCGCCGCCAGACCGAAGCCCTGGCGAGAGGGGATCGAGGTCGTC
GCCATGGACGGATTCACCGGGTTCAAGACCGCCGCCGCCGAAGAACTGCCCGACGCGGCCCCGGTCATGGATCCGTTCCACGTGATCCGGCTCGCCGGTG
ACGCGCTGGAGAACTGCCGACGCCGGGTACAGCACGACGTCTTCGGCCGGCGGGGCATGAAGGGCGATCCGCTCTACCAGGCCAGACGGACCCTGCTCAC
CGGTGCCGGTCTGCTCACCGACAAGCAGCAGGCGCGGCTAGATGCCCTGTTCGCCGAGGACAGGCACGTCGAGGTCGAAGCGACGTGGGGCATCTACCAA
GACATGATCACCGCCTACCGGGACAAGGACCGCGGCCTGGGCAGATTCTTCCTCGCGCACACGATCGACAAGATCAGCGCCAGCGTCCCGGAGCAGCTCG
TCGAGATCCGCAAACTCGCCCGCACCCTCACACAGCGCGCTTCGGACGTGCTCGGCTACTTCGACCGCCCCGGCACCAGCAACGGCCCCACCGAAGCGAT
CAACGGCCGACTCGAACACCTCCGCGGCACGGCCCTCGGCTTCCGCAACCTCAGCCACTACATCGCTCGGTCGCTGCTCGAAGCCGGCGGATTCAGACCC
GCGCTACACCCTCGTTCGTGAAGAGCC
GGAAGACCTCGACGTGTCACACCCTACTTTCACTACACCTTGCCTGACCACGTTCTGCGGTCTCGACGAGCTCGGCCTGGAGGCTGTCGGGCAGCGTCTG
GACCCGGATCGGGCGGTGATCGAGTGCCGTGTCGTGGAGCCGGACCGGTGGTGCCGCGAGTGTGGATGCGAGGGCGCCCCGCGCGACACGGTGATCCGTC
GGCTCGCGCATGAGCCGTTCGGGCATCGGCCCACGACCCTGCTGATCCGGGTCCGGCGCTACAAATGCTGCGGGTGTGGGCGGGTCTGGCGGCAGGACAC
CACGGCCGCCGCGCCGGTACGGGCGAAGATCTCCCGCGGTGGGTTGGCGTGGGGGCTGGCGGGCTTGGTCCTCGATCATCTCTCGGTCACGCGTGTCGCG
GCAGGGCTGGGGGTGTCCTGGTCCGCCGCGAACGACGCGATCCTCGCCGAGGGCCGCCGGCGGCTGATCGATGACCCGGCGCGGTTCGAGGGCGTGACCA
CGATCGGCGTCGACGAGCACGTGTGGCGACACACCCGCCACGGCGACACGTACGTGACCGTGATCATCGACCTGACCCCGGTGCGCGACAAGACCGGCCC
GGCACGGCTGCTGGACATGGTCGCCGGACGCTCGAAAGCCGTGTTCAAGACCTGGCTCGCCGCCAGACCGAAGCCCTGGCGAGAGGGGATCGAGGTCGTC
GCCATGGACGGATTCACCGGGTTCAAGACCGCCGCCGCCGAAGAACTGCCCGACGCGGCCCCGGTCATGGATCCGTTCCACGTGATCCGGCTCGCCGGTG
ACGCGCTGGAGAACTGCCGACGCCGGGTACAGCACGACGTCTTCGGCCGGCGGGGCATGAAGGGCGATCCGCTCTACCAGGCCAGACGGACCCTGCTCAC
CGGTGCCGGTCTGCTCACCGACAAGCAGCAGGCGCGGCTAGATGCCCTGTTCGCCGAGGACAGGCACGTCGAGGTCGAAGCGACGTGGGGCATCTACCAA
GACATGATCACCGCCTACCGGGACAAGGACCGCGGCCTGGGCAGATTCTTCCTCGCGCACACGATCGACAAGATCAGCGCCAGCGTCCCGGAGCAGCTCG
TCGAGATCCGCAAACTCGCCCGCACCCTCACACAGCGCGCTTCGGACGTGCTCGGCTACTTCGACCGCCCCGGCACCAGCAACGGCCCCACCGAAGCGAT
CAACGGCCGACTCGAACACCTCCGCGGCACGGCCCTCGGCTTCCGCAACCTCAGCCACTACATCGCTCGGTCGCTGCTCGAAGCCGGCGGATTCAGACCC
GCGCTACACCCTCGTTCGTGAAGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1308 bp | 435 aa | 114 | 1421 | + | No |
Chemistry : Unknow
ORF sequence :
VSHPTFTTPCLTTFCGLDELGLEAVGQRLDPDRAVIECRVVEPDRWCRECGCEGAPRDTVIRRLAHEPFGHRPTTLLIRVRRYKCCGCGRVWRQDTTAAA
PVRAKISRGGLAWGLAGLVLDHLSVTRVAAGLGVSWSAANDAILAEGRRRLIDDPARFEGVTTIGVDEHVWRHTRHGDTYVTVIIDLTPVRDKTGPARLL
DMVAGRSKAVFKTWLAARPKPWREGIEVVAMDGFTGFKTAAAEELPDAAPVMDPFHVIRLAGDALENCRRRVQHDVFGRRGMKGDPLYQARRTLLTGAGL
LTDKQQARLDALFAEDRHVEVEATWGIYQDMITAYRDKDRGLGRFFLAHTIDKISASVPEQLVEIRKLARTLTQRASDVLGYFDRPGTSNGPTEAINGRL
EHLRGTALGFRNLSHYIARSLLEAGGFRPALHPRS
PVRAKISRGGLAWGLAGLVLDHLSVTRVAAGLGVSWSAANDAILAEGRRRLIDDPARFEGVTTIGVDEHVWRHTRHGDTYVTVIIDLTPVRDKTGPARLL
DMVAGRSKAVFKTWLAARPKPWREGIEVVAMDGFTGFKTAAAEELPDAAPVMDPFHVIRLAGDALENCRRRVQHDVFGRRGMKGDPLYQARRTLLTGAGL
LTDKQQARLDALFAEDRHVEVEATWGIYQDMITAYRDKDRGLGRFFLAHTIDKISASVPEQLVEIRKLARTLTQRASDVLGYFDRPGTSNGPTEAINGRL
EHLRGTALGFRNLSHYIARSLLEAGGFRPALHPRS
Blast result :
Comments
ISPfr1 is 84% aa similar to ISAar42.
References
1] ISfinder annotation (2009)