ISPfr1

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Propionibacterium freudenreichii
Propionibacterium freudenreichii
DNA section
IS Length : 1427 bp

Ends


IR Length : 27/28

IRL : GGCTCTTCACGAACGAGGGTGTAGCGGGTTGAGCGTGTCGGTGGCCGGGT
IRR : GGCTCTTCACGAACGAGGGTGTAGCGCGGGTCTGAATCCGCCGGCTTCGA

Insertion site


Left flankDirect repeatRight flankDR Length
GGTCGGGGCGACTTAAGATCGCCGCAGT8
AGAGATTGAGCTACTGCTTC0
CCGGTTTTCCACAAAGCTGG0
CTCCGCCGAGCCCTATATCT/CGCATTGAGCCTC8
CCGAAGACGGTGCTTTATCCACACCTATCCTC8
GATCCTGTTGGCCCTTGACCGGGCCCTGCGCT8
GCGCCTTGTGGCCCATTCCCTGCTGGAACGCC8
GGATACGAAACGGCTTTCCCCG0
CCGGAACGGGGAGCGAAACCCCATCCCGGCGT8
GTGCAGATTTGTCAACGCGGTC0

DNA sequence

GGCTCTTCACGAACGAGGGTGTAGCGGGTTGAGCGTGTCGGTGGCCGGGTAGGGGTCGAGGTCTCCCTGAGGATGGAAGTTCTCACACTCGCCATCTGCC
GGAAGACCTCGACGTGTCACACCCTACTTTCACTACACCTTGCCTGACCACGTTCTGCGGTCTCGACGAGCTCGGCCTGGAGGCTGTCGGGCAGCGTCTG
GACCCGGATCGGGCGGTGATCGAGTGCCGTGTCGTGGAGCCGGACCGGTGGTGCCGCGAGTGTGGATGCGAGGGCGCCCCGCGCGACACGGTGATCCGTC
GGCTCGCGCATGAGCCGTTCGGGCATCGGCCCACGACCCTGCTGATCCGGGTCCGGCGCTACAAATGCTGCGGGTGTGGGCGGGTCTGGCGGCAGGACAC
CACGGCCGCCGCGCCGGTACGGGCGAAGATCTCCCGCGGTGGGTTGGCGTGGGGGCTGGCGGGCTTGGTCCTCGATCATCTCTCGGTCACGCGTGTCGCG
GCAGGGCTGGGGGTGTCCTGGTCCGCCGCGAACGACGCGATCCTCGCCGAGGGCCGCCGGCGGCTGATCGATGACCCGGCGCGGTTCGAGGGCGTGACCA
CGATCGGCGTCGACGAGCACGTGTGGCGACACACCCGCCACGGCGACACGTACGTGACCGTGATCATCGACCTGACCCCGGTGCGCGACAAGACCGGCCC
GGCACGGCTGCTGGACATGGTCGCCGGACGCTCGAAAGCCGTGTTCAAGACCTGGCTCGCCGCCAGACCGAAGCCCTGGCGAGAGGGGATCGAGGTCGTC
GCCATGGACGGATTCACCGGGTTCAAGACCGCCGCCGCCGAAGAACTGCCCGACGCGGCCCCGGTCATGGATCCGTTCCACGTGATCCGGCTCGCCGGTG
ACGCGCTGGAGAACTGCCGACGCCGGGTACAGCACGACGTCTTCGGCCGGCGGGGCATGAAGGGCGATCCGCTCTACCAGGCCAGACGGACCCTGCTCAC
CGGTGCCGGTCTGCTCACCGACAAGCAGCAGGCGCGGCTAGATGCCCTGTTCGCCGAGGACAGGCACGTCGAGGTCGAAGCGACGTGGGGCATCTACCAA
GACATGATCACCGCCTACCGGGACAAGGACCGCGGCCTGGGCAGATTCTTCCTCGCGCACACGATCGACAAGATCAGCGCCAGCGTCCCGGAGCAGCTCG
TCGAGATCCGCAAACTCGCCCGCACCCTCACACAGCGCGCTTCGGACGTGCTCGGCTACTTCGACCGCCCCGGCACCAGCAACGGCCCCACCGAAGCGAT
CAACGGCCGACTCGAACACCTCCGCGGCACGGCCCTCGGCTTCCGCAACCTCAGCCACTACATCGCTCGGTCGCTGCTCGAAGCCGGCGGATTCAGACCC
GCGCTACACCCTCGTTCGTGAAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1308 bp435 aa1141421+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

VSHPTFTTPCLTTFCGLDELGLEAVGQRLDPDRAVIECRVVEPDRWCRECGCEGAPRDTVIRRLAHEPFGHRPTTLLIRVRRYKCCGCGRVWRQDTTAAA
PVRAKISRGGLAWGLAGLVLDHLSVTRVAAGLGVSWSAANDAILAEGRRRLIDDPARFEGVTTIGVDEHVWRHTRHGDTYVTVIIDLTPVRDKTGPARLL
DMVAGRSKAVFKTWLAARPKPWREGIEVVAMDGFTGFKTAAAEELPDAAPVMDPFHVIRLAGDALENCRRRVQHDVFGRRGMKGDPLYQARRTLLTGAGL
LTDKQQARLDALFAEDRHVEVEATWGIYQDMITAYRDKDRGLGRFFLAHTIDKISASVPEQLVEIRKLARTLTQRASDVLGYFDRPGTSNGPTEAINGRL
EHLRGTALGFRNLSHYIARSLLEAGGFRPALHPRS

 

Blast result :
Comments
ISPfr1 is 84% aa similar to ISAar42.
References
1] ISfinder annotation (2009)