ISArsp5

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008537 ND Arthrobacter sp.
Arthrobacter sp. FB24 plasmid 1
DNA section
IS Length : 1426 bp

Ends


Left end : TGGCCTGCCGGCCCCGGCAGGATTGCCGCCCCCAGTCTTCAATGATCCGGGGGGTGTTGTCACCGGGGTCCGGTAGGTGCCGGAGAGACCGCTAATAGAG
Right end : GCCGCTGCGACACCCTCTACGCCATGCTCAGGGACGGCACCTTCTACGAACCACGGCTACCCTCAGCCGCTTGACGAAAACCATAGAGGCCCCCCACGCG

Insertion site


Left flankDirect repeatRight flankDR Length
GAGGGTGTGCCCGTCCCATG0

DNA sequence

TGGCCTGCCGGCCCCGGCAGGATTGCCGCCCCCAGTCTTCAATGATCCGGGGGGTGTTGTCACCGGGGTCCGGTAGGTGCCGGAGAGACCGCTAATAGAG
GCAGGACAGGTGGGGATCGTCGTGCGTAACGTGGATGCCGGGCTCTGACACCGCGGACAGTCCAGCACTGGGTATCAGCTGCTGTGACTGGGAGGTACTG
GTGATCGGAAACCACGAAAGCATTGATGTCTTCATCGGCCTGGACGTCGGCAAGGGCGAGCACCACGCCGTTGCCGTGGACAGGGCCGGTAAGAAACTCT
TCGACAAGGCTTTGCCCAACGACGAGGCCCGGCTGCGCGAAATCCTCGGCTCTTTGAATAGGCACGGCAGTATCCTGCTCGTGGTTGACCAGCCGGCCAC
GATCGGTGCACTCCCCGTCGCGGTTGCCCGGGCCGCCGGCGTCACAGTCGGATACCTGCCCGGGCTGGCGATGCGCCGGATCGCGGACCTGCACCCGGGC
GAAGCGAAAACCGACGCGCGGGACGCGTTCATCATCGCCGAAGCGGCCCGGACCATGCCGCACACGTTGCGCTCCATCCAGATCGCTGACGAACAGCTCG
CGGAACTGACCATGCTCTGCGGCTTCGATGACGACCTGGCCAAACAGGCCACCGCGACATCGAACCGGATCCGGGGCCTGCTGACCCAGATCCACCCCGC
ACTGGAGCGTGTCCTTGGCCCGCGGTTGGACCACCCGGCACTGTTGGATCTGCTGCGGACCTGGCCGACCCCCGACGCCCTCCGCCATGCCGGCCGGCGC
AGGATCGCCAGCCGGCTCACAAAGCTTGCACCCAGGATGGGTGAACGTCTCGCCGACGAGATCATCAACGCACTGGACCAACAAACGGTCACCGTCGTAG
GGACAAACGCTGCCACGATCGTGCTGCCACAGTTGGCGCGGATGCTCGCCGACATCCGGCAGGCCCGCGACACCGTTTTCATCCAGGTCGAAGCCCTCGT
GGAGGCCCACCCTCTTCACCCGGTCCTGACGTCACTCCCGGCGGTCGGCGTCAGGACCGCAGCACGGATCCTCACCGAGATCGTCGGCAAAGACTTCGCA
TCTGCCAGGCATCTGGCCTCCTACGCAGGCCTCGCCCCCGTGACCTGGAGATCCGGAACATCCATTCGCGGAGACCACCCATCCCGGAAGGGAAACAAGA
TCCTCAAAAGAGCCCTCTTCCTCTCCGCCTTCGCCGCGCTGAAAGATCCTCCGTCGAGGGCCTACTACGACCGCAAGCGGGCCGAAGGCAAACGTCACAA
CCAGGCTCTAATCGCTCTGGCCCGCCGCCGCTGCGACACCCTCTACGCCATGCTCAGGGACGGCACCTTCTACGAACCACGGCTACCCTCAGCCGCTTGA
CGAAAACCATAGAGGCCCCCCACGCG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1266 bp421 aa1351400+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MPGSDTADSPALGISCCDWEVLVIGNHESIDVFIGLDVGKGEHHAVAVDRAGKKLFDKALPNDEARLREILGSLNRHGSILLVVDQPATIGALPVAVARA
AGVTVGYLPGLAMRRIADLHPGEAKTDARDAFIIAEAARTMPHTLRSIQIADEQLAELTMLCGFDDDLAKQATATSNRIRGLLTQIHPALERVLGPRLDH
PALLDLLRTWPTPDALRHAGRRRIASRLTKLAPRMGERLADEIINALDQQTVTVVGTNAATIVLPQLARMLADIRQARDTVFIQVEALVEAHPLHPVLTS
LPAVGVRTAARILTEIVGKDFASARHLASYAGLAPVTWRSGTSIRGDHPSRKGNKILKRALFLSAFAALKDPPSRAYYDRKRAEGKRHNQALIALARRRC
DTLYAMLRDGTFYEPRLPSAA

 

Blast result :
Comments
ISArsp5 is 86% aa similar to ISBma3.
References
1] ISfinder annotation (2009).

2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Thompson,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Beasley,F., Chen,W., Jerke,K., Nakatsu,C.H. and Richardson,P. (2006) Direct submission Genbank.