ISArsp4
- Family IS256
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_008537 | ND | Arthrobacter sp. | Arthrobacter sp. FB24 plasmid 1 |
DNA section
IS Length : 1400 bp
Ends
IR Length : 24/29
IRL : GGGACTGTGGAAATAACGGTGTATCCGGCTCGACACGCCGGGCGGTAAGC
IRR : GGGACTATCTCATTAACGGTGTATCCGGCGTTTTCATTTAGTAGCTTTCA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CTCCGCAGAC | CGGCAATCAT | 0 |
DNA sequence
GGGACTGTGGAAATAACGGTGTATCCGGCTCGACACGCCGGGCGGTAAGCCTGGCGGGAAGGAGCCCGATATGGCCGCAACACTTGAGGCTGTGCCGAGT
ACGAAAACTGCTGACAAGAAGACAGAAATATCCGAGGCCGACGCTGCCCGCGAGCTGGTCAGGATGGCGAAGGAGCAGGGCCTGTCCCTGACCGGTCCCG
ACGGGCTGCTCAAGCAGCTTACGAAGACCGTGATCGAGACCGCGCTCGACGAGGAAATGACCGAGCATCTCGGATATGAAAAGCACGATTCGGCCGGCAA
ACAGACTGCCAACTCCCGCAACGGGGTTCGCCCGAAAACGGTGCTCACGGAGACGACCGGCCCGGTGGAGGTGGACGTGCCGCGGGACCGGGCCGGCACG
TTCGAGCCGGTCATCGTCAAGAAGCGCCAGCGCCGCCTGACCGGGGTCGATGAGATGGTCCTCTCGCTCTACGCGAAGGGCCTGACCACGGGAGAAATCA
GTGCGCACTTCGCTGAGATCTACGGCGCGTCCGTGTCGAAGGAGACCGTCTCCCGGATCACCGACCGGGTGTTGGAGGAGATGGCCGCGTGGCAGAACCG
GCCGCTGGACGAGGTCTACGCGGCGATCTTCATCGACGCAATCGTCGTCAAGGTCCGCGACGGGCAAGTCGCCAACCGGCCCATCTACGCTGCGATCGGC
GTGACTCTGGAGGGCGAGAAGGACATCCTCGGCCTGTGGGCCGGGACCGGCGGAGAGGGCGCGAAGTTCTGGATGAGCGTGCTCACTGACATCAAGAACC
GCGGCGTGAAAGACACCTTCTTCCTAGTCTGCGACGGGCTCAAAGGCCTGCCCGAAGTCGTCACCAACGTTTGGCCGCTGGCGACCGTGCAGACCTGCAT
CATCCACCTGATCCGGAACACCTTCCGGTTGGCCTCGAGACAGGACTGGGACGCCCTCAAACGCGACGTGAAGCCCATCTACACGGCGCCGAATGCTGAG
GCGGCCCGGACGGCGTTGGAGGAACTCGCGGAGCGCTGGGGCAGGAAATACGGGGCGATCGTGCGGCTCTGGGAGAACGCGTGGGAAGAGCTCATCCCGT
TCCTGGACTACGACGTGGAAATCCGGCGCGTGATCTGCTCGACCAACGCCATCGAATCGCTCAACGCCAGATACCGGCGCGCCGTCAAGGCCCGGGGTCA
TCTCCCCACCGAGCAGGCTGCGCTAAAGTGCCTCTATCTGGTCACCCGATCCCTCGATCCGACCGGTGCCGGCAAGACCCGATGGGCCGTGCGTTGGAAG
CCCGCTTTGAACGCCTTCGCCATCACTTTCAGCGACCGATTCCCGGCAGCTGAAAGCTACTAAATGAAAACGCCGGATACACCGTTAATGAGATAGTCCC
ACGAAAACTGCTGACAAGAAGACAGAAATATCCGAGGCCGACGCTGCCCGCGAGCTGGTCAGGATGGCGAAGGAGCAGGGCCTGTCCCTGACCGGTCCCG
ACGGGCTGCTCAAGCAGCTTACGAAGACCGTGATCGAGACCGCGCTCGACGAGGAAATGACCGAGCATCTCGGATATGAAAAGCACGATTCGGCCGGCAA
ACAGACTGCCAACTCCCGCAACGGGGTTCGCCCGAAAACGGTGCTCACGGAGACGACCGGCCCGGTGGAGGTGGACGTGCCGCGGGACCGGGCCGGCACG
TTCGAGCCGGTCATCGTCAAGAAGCGCCAGCGCCGCCTGACCGGGGTCGATGAGATGGTCCTCTCGCTCTACGCGAAGGGCCTGACCACGGGAGAAATCA
GTGCGCACTTCGCTGAGATCTACGGCGCGTCCGTGTCGAAGGAGACCGTCTCCCGGATCACCGACCGGGTGTTGGAGGAGATGGCCGCGTGGCAGAACCG
GCCGCTGGACGAGGTCTACGCGGCGATCTTCATCGACGCAATCGTCGTCAAGGTCCGCGACGGGCAAGTCGCCAACCGGCCCATCTACGCTGCGATCGGC
GTGACTCTGGAGGGCGAGAAGGACATCCTCGGCCTGTGGGCCGGGACCGGCGGAGAGGGCGCGAAGTTCTGGATGAGCGTGCTCACTGACATCAAGAACC
GCGGCGTGAAAGACACCTTCTTCCTAGTCTGCGACGGGCTCAAAGGCCTGCCCGAAGTCGTCACCAACGTTTGGCCGCTGGCGACCGTGCAGACCTGCAT
CATCCACCTGATCCGGAACACCTTCCGGTTGGCCTCGAGACAGGACTGGGACGCCCTCAAACGCGACGTGAAGCCCATCTACACGGCGCCGAATGCTGAG
GCGGCCCGGACGGCGTTGGAGGAACTCGCGGAGCGCTGGGGCAGGAAATACGGGGCGATCGTGCGGCTCTGGGAGAACGCGTGGGAAGAGCTCATCCCGT
TCCTGGACTACGACGTGGAAATCCGGCGCGTGATCTGCTCGACCAACGCCATCGAATCGCTCAACGCCAGATACCGGCGCGCCGTCAAGGCCCGGGGTCA
TCTCCCCACCGAGCAGGCTGCGCTAAAGTGCCTCTATCTGGTCACCCGATCCCTCGATCCGACCGGTGCCGGCAAGACCCGATGGGCCGTGCGTTGGAAG
CCCGCTTTGAACGCCTTCGCCATCACTTTCAGCGACCGATTCCCGGCAGCTGAAAGCTACTAAATGAAAACGCCGGATACACCGTTAATGAGATAGTCCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1293 bp | 430 aa | 71 | 1363 | + | No |
Chemistry : DDE
ORF sequence :
MAATLEAVPSTKTADKKTEISEADAARELVRMAKEQGLSLTGPDGLLKQLTKTVIETALDEEMTEHLGYEKHDSAGKQTANSRNGVRPKTVLTETTGPVE
VDVPRDRAGTFEPVIVKKRQRRLTGVDEMVLSLYAKGLTTGEISAHFAEIYGASVSKETVSRITDRVLEEMAAWQNRPLDEVYAAIFIDAIVVKVRDGQV
ANRPIYAAIGVTLEGEKDILGLWAGTGGEGAKFWMSVLTDIKNRGVKDTFFLVCDGLKGLPEVVTNVWPLATVQTCIIHLIRNTFRLASRQDWDALKRDV
KPIYTAPNAEAARTALEELAERWGRKYGAIVRLWENAWEELIPFLDYDVEIRRVICSTNAIESLNARYRRAVKARGHLPTEQAALKCLYLVTRSLDPTGA
GKTRWAVRWKPALNAFAITFSDRFPAAESY
VDVPRDRAGTFEPVIVKKRQRRLTGVDEMVLSLYAKGLTTGEISAHFAEIYGASVSKETVSRITDRVLEEMAAWQNRPLDEVYAAIFIDAIVVKVRDGQV
ANRPIYAAIGVTLEGEKDILGLWAGTGGEGAKFWMSVLTDIKNRGVKDTFFLVCDGLKGLPEVVTNVWPLATVQTCIIHLIRNTFRLASRQDWDALKRDV
KPIYTAPNAEAARTALEELAERWGRKYGAIVRLWENAWEELIPFLDYDVEIRRVICSTNAIESLNARYRRAVKARGHLPTEQAALKCLYLVTRSLDPTGA
GKTRWAVRWKPALNAFAITFSDRFPAAESY
Blast result :
Comments
ISArsp4 is 85% aa similar to IS1554.
References
1] ISfinder annotation (2009).
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Thompson,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Beasley,F., Chen,W., Jerke,K., Nakatsu,C.H. and Richardson,P. (2006) Direct submission Genbank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Thompson,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Beasley,F., Chen,W., Jerke,K., Nakatsu,C.H. and Richardson,P. (2006) Direct submission Genbank.