ISAba10

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
GQ379223 ND Acinetobacter baumannii
Acinetobacter baumannii SC0702
DNA section
IS Length : 1023 bp

Ends


IR Length : 17/18

IRL : GGCTTTGTTGCATAAATAAATTTCATCCCCATACATGTTAGATGAATACA
IRR : GGCTTTGTTGCACAAATAGACGAAAGGTAGAGTTGTTCTAATCTTCAGAT

Insertion site


Left flankDirect repeatRight flankDR Length
AAAGTCAATGGATCAACTTATGCTGAAGA9

DNA sequence

GGCTTTGTTGCATAAATAAATTTCATCCCCATACATGTTAGATGAATACAGAATCAAAAAGCCGATACAAAACAACGAACTGGTCTGAGTACAATCAGGC
TTTACGTCAACGGGGTGCTTTCACCATTTGGTTTGATCCCCAAATGCAATGGTCTGCAACACCTACTGGAAAAAAAGGACGTCAACCTACCTACACTGAT
ATAGCAATTCAATTTGCCCTGACGATACGAAACCTGTTCCAACTGGCTTTACGCCAAACACAAGGTTTCATTCAAAGCTTTTTGCAAATGGCTCACCTCG
ACTGGAATGTTCCAGACTTCTCAACATTGAGTCGGCGAGCAGATAAGCTCCAGCCACTTCTACATAAATCAGCAAAAAATCCACAGGAAGACTTGCATAT
TTTAGTTGATAGCACAGGGATCAAAGTTACAGGTGATGGGGAATGGGTGCGTAAAAAACATGGCGTAAACCAACATCGTCAATGGCTGAAATTACATCTT
GCGACAGATGCAAACAGTGGAGAAATACAAGCGGTTGAAGTCACGACCTGCCAATATGGTGATGCTGAAATGCTCCAACCTCTTTTAGATCAAATTGATG
AGCCCATTGCATCTGTCACGGCTGATGGTGCTTATGACACAGTGAATTGTTATGATGCGATTTTGAAACGGCAAGCAAATGTAATTATCCCTCCTCGTTC
CAATGCTGCTTTATGGGCAGAAAATGAAATTGGTAAAGCAAGGAATCATGCAGTACAAGGCTGTTGGGACAAGGGTCAAAAGCAGTGGAAACGAGATATT
GGTTATCATCGACGATCCCGAATAGAGGCTAAAATGTTTGCCTTGAAACGACTTGGACAAGGTGTATCTAGTCGATGCTTTAATCGTCAGGTGGTTGACT
TGCAAATAAGAGTCGATATTTTGAATAAATTTACTCAACTTGGTACAGCTAAAACGGTGGCTGTTGCATAAATATCTGAAGATTAGAACAACTCTACCTT
TCGTCTATTTGTGCAACAAAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
930 bp309 aa42971+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNTESKSRYKTTNWSEYNQALRQRGAFTIWFDPQMQWSATPTGKKGRQPTYTDIAIQFALTIRNLFQLALRQTQGFIQSFLQMAHLDWNVPDFSTLSRRA
DKLQPLLHKSAKNPQEDLHILVDSTGIKVTGDGEWVRKKHGVNQHRQWLKLHLATDANSGEIQAVEVTTCQYGDAEMLQPLLDQIDEPIASVTADGAYDT
VNCYDAILKRQANVIIPPRSNAALWAENEIGKARNHAVQGCWDKGQKQWKRDIGYHRRSRIEAKMFALKRLGQGVSSRCFNRQVVDLQIRVDILNKFTQL
GTAKTVAVA

 

Blast result :
Comments
ISAba10 is 66% aa similar to ISGNB1-1.
References
1] ISfinder annotation (2009)
2] Lee,Y., Yong,D., Jeong,S.H. and Lee,K. (2009) Direct submission GenBank.