ISArsp3
- Family IS110
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_008541 | ND | Arthrobacter sp. | Arthrobacter sp. FB24 Arthrobacter sp. FB24 plasmid 2 |
DNA section
IS Length : 1596 bp
Ends
Left end : AAGTGAGTTTCTCAGGGGCGCTTTCGCTCCGCCGTGGGGGCCGAAAATGTACTGCTGTGGGGAACCTTTGCGGTGTCGGGGCTGCCGGAGCAGACTGAAG
Right end : TCGGCTATCAAGTCATTCTCGAACCCCTGCAACAGACCGGATAACACCGCTCACCCCACGCACCCCACCGCACTCACCTAATTTTCATGTCAGAGAGCGT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GCCGCGGACC | CAGGATTTAC | 0 |
DNA sequence
AAGTGAGTTTCTCAGGGGCGCTTTCGCTCCGCCGTGGGGGCCGAAAATGTACTGCTGTGGGGAACCTTTGCGGTGTCGGGGCTGCCGGAGCAGACTGAAG
AGTGTGTTCCGGTCGACCCCGGTCTCTCTTTAGTGCCGGTGAGCCTGTAAGTGAGTTTGGTGGTGGAGGGCGCAGCTTTTGTCCGCGGGACCGTGGAATG
TTGCCGTTGAGCACGAATGTCAGATTTGTTGTTTATCCGCCTTCCCCGGGACACAGACGCCATCTGTTGGACTGTTCGAGGAAGGGTGAGCTCTCATGGA
GGTCATTCACCCGCGCTGCGCGGGTGTCGATATTTCAAAGAAGGACGCGAAGGTCTGTGTCCGCATCCAGGGCCGCGGCGGCCGGTCCACCACATCCACC
ATCACGACCTGGGGTTCGATGACGGGGCAGATCCTGGGGCTAAAGGAACACCTCCTGGACGAGCACGTGGATCTGGTGGTCATGGAGGCCACCGGTGATT
ACTGGCGCCCCTTCTACTACCTGCTTGAAGACGACGGACTGAACATCATCCTGGTCAATGCCCATGACGCCAGGAACGTCCCGGGCCGCAAAACCGACGT
TTCCGACGCTGCCTGGCTTGCCGACCTGGGCGCCCACGGGCTGGTCCGGGCCTCCTTCGTGCCCCCGCCTCCGATCCGTGAACTGCGGGACCTGACCCGG
GCCCGGACCATCATCACTCAGGAACGGACCCGGGAAATCCAGCGCCTGGAGAAACTCCTCGAGGACGCCTGCATCAAACTATCCTCGGTAGCTTCGAACA
TCACCGGGGTCTCCGGACGACTGATCCTCCAAGCACTCATCGACGGGCAGACCGACCCCGCGGCCCTGGCAGAGATGGCCCAACGCCGGCTGCGGTCCAA
AATCCCTGAACTCACCCAAGCCCTCAACGGCCGGTTCACCGAACACCACCGCTACATGACCGGACTCTATCTGCACCGGATTGATGCCCACACCGCCGAT
ATCAACGACCTCAGCGCCAGGATCGAGGCGGCGATGGAGCCCTTTCGTTTCGCCCGGGAGCTCCTCGTGAGCATCCCGGGGTTCAGCACCACCATCGCGG
AAATCTTCATCGCCGAAACCGGCGCCGACATGAGCGCATTCGCCACCGCAGGGCAGCTGGCATCCTGGGCCGGTACTTCCCCGGGATCCAACGAATCCGC
CGGACGGGTCAAATCCACCAAAACACGGCCCGGCAACCGGTACCTCAAAGGTGCCCTGGGCATCGCTGCTCTGTCCTGCGCGAAATCGAAGAACACCTAC
CTCGGTGCCAGATACCGGCGCATTGCCTCCCGGCGCGGACCCGCCAAAGCCCTCGTCGCCGTCGAACACTCCATCCTCACCGCAGCGTGGCACATGCTCA
CCACCGGCGAACTCTACAACGACCCCGGCGCCGACTACTTCACCCGGCAGACACCCGTTAAAACCATGGCCCGGGCCGTCAGACAACTAGAATCCCTCGG
CTATCAAGTCATTCTCGAACCCCTGCAACAGACCGGATAACACCGCTCACCCCACGCACCCCACCGCACTCACCTAATTTTCATGTCAGAGAGCGT
AGTGTGTTCCGGTCGACCCCGGTCTCTCTTTAGTGCCGGTGAGCCTGTAAGTGAGTTTGGTGGTGGAGGGCGCAGCTTTTGTCCGCGGGACCGTGGAATG
TTGCCGTTGAGCACGAATGTCAGATTTGTTGTTTATCCGCCTTCCCCGGGACACAGACGCCATCTGTTGGACTGTTCGAGGAAGGGTGAGCTCTCATGGA
GGTCATTCACCCGCGCTGCGCGGGTGTCGATATTTCAAAGAAGGACGCGAAGGTCTGTGTCCGCATCCAGGGCCGCGGCGGCCGGTCCACCACATCCACC
ATCACGACCTGGGGTTCGATGACGGGGCAGATCCTGGGGCTAAAGGAACACCTCCTGGACGAGCACGTGGATCTGGTGGTCATGGAGGCCACCGGTGATT
ACTGGCGCCCCTTCTACTACCTGCTTGAAGACGACGGACTGAACATCATCCTGGTCAATGCCCATGACGCCAGGAACGTCCCGGGCCGCAAAACCGACGT
TTCCGACGCTGCCTGGCTTGCCGACCTGGGCGCCCACGGGCTGGTCCGGGCCTCCTTCGTGCCCCCGCCTCCGATCCGTGAACTGCGGGACCTGACCCGG
GCCCGGACCATCATCACTCAGGAACGGACCCGGGAAATCCAGCGCCTGGAGAAACTCCTCGAGGACGCCTGCATCAAACTATCCTCGGTAGCTTCGAACA
TCACCGGGGTCTCCGGACGACTGATCCTCCAAGCACTCATCGACGGGCAGACCGACCCCGCGGCCCTGGCAGAGATGGCCCAACGCCGGCTGCGGTCCAA
AATCCCTGAACTCACCCAAGCCCTCAACGGCCGGTTCACCGAACACCACCGCTACATGACCGGACTCTATCTGCACCGGATTGATGCCCACACCGCCGAT
ATCAACGACCTCAGCGCCAGGATCGAGGCGGCGATGGAGCCCTTTCGTTTCGCCCGGGAGCTCCTCGTGAGCATCCCGGGGTTCAGCACCACCATCGCGG
AAATCTTCATCGCCGAAACCGGCGCCGACATGAGCGCATTCGCCACCGCAGGGCAGCTGGCATCCTGGGCCGGTACTTCCCCGGGATCCAACGAATCCGC
CGGACGGGTCAAATCCACCAAAACACGGCCCGGCAACCGGTACCTCAAAGGTGCCCTGGGCATCGCTGCTCTGTCCTGCGCGAAATCGAAGAACACCTAC
CTCGGTGCCAGATACCGGCGCATTGCCTCCCGGCGCGGACCCGCCAAAGCCCTCGTCGCCGTCGAACACTCCATCCTCACCGCAGCGTGGCACATGCTCA
CCACCGGCGAACTCTACAACGACCCCGGCGCCGACTACTTCACCCGGCAGACACCCGTTAAAACCATGGCCCGGGCCGTCAGACAACTAGAATCCCTCGG
CTATCAAGTCATTCTCGAACCCCTGCAACAGACCGGATAACACCGCTCACCCCACGCACCCCACCGCACTCACCTAATTTTCATGTCAGAGAGCGT
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1245 bp | 414 aa | 296 | 1540 | + | No |
Chemistry : DEDD
ORF sequence :
MEVIHPRCAGVDISKKDAKVCVRIQGRGGRSTTSTITTWGSMTGQILGLKEHLLDEHVDLVVMEATGDYWRPFYYLLEDDGLNIILVNAHDARNVPGRKT
DVSDAAWLADLGAHGLVRASFVPPPPIRELRDLTRARTIITQERTREIQRLEKLLEDACIKLSSVASNITGVSGRLILQALIDGQTDPAALAEMAQRRLR
SKIPELTQALNGRFTEHHRYMTGLYLHRIDAHTADINDLSARIEAAMEPFRFARELLVSIPGFSTTIAEIFIAETGADMSAFATAGQLASWAGTSPGSNE
SAGRVKSTKTRPGNRYLKGALGIAALSCAKSKNTYLGARYRRIASRRGPAKALVAVEHSILTAAWHMLTTGELYNDPGADYFTRQTPVKTMARAVRQLES
LGYQVILEPLQQTG
DVSDAAWLADLGAHGLVRASFVPPPPIRELRDLTRARTIITQERTREIQRLEKLLEDACIKLSSVASNITGVSGRLILQALIDGQTDPAALAEMAQRRLR
SKIPELTQALNGRFTEHHRYMTGLYLHRIDAHTADINDLSARIEAAMEPFRFARELLVSIPGFSTTIAEIFIAETGADMSAFATAGQLASWAGTSPGSNE
SAGRVKSTKTRPGNRYLKGALGIAALSCAKSKNTYLGARYRRIASRRGPAKALVAVEHSILTAAWHMLTTGELYNDPGADYFTRQTPVKTMARAVRQLES
LGYQVILEPLQQTG
Blast result :
Comments
ISArsp3 is 62% aa similar to ISAzo28.
References
1] ISfinder annotation (2009)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,Chertkov,O., Thompson,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Beasley,F., Chen,W., Jerke,K., Nakatsu,C.H. and Richardson,P. (2006) US DOE Joint Genome Institute. Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,Chertkov,O., Thompson,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Beasley,F., Chen,W., Jerke,K., Nakatsu,C.H. and Richardson,P. (2006) US DOE Joint Genome Institute. Direct submission GenBank.