ISAcl1

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_011886 ND Arthrobacter chlorophenolicus
Arthrobacter chlorophenolicus A6
DNA section
IS Length : 1341 bp

Ends


IR Length : 25/28

IRL : ATCGATTGCTGAGTAACTGCCGTTATGAGAGGGGCGGATTCATACGGTCG
IRR : ATCGATTGCTGGGTAATTGCCGTTTTGACCTTGGAAAGTCAAGTGGTGGT

Insertion site


Left flankDirect repeatRight flankDR Length
CGTCATTTAAGAGGTGGCGGGA2

DNA sequence

ATCGATTGCTGAGTAACTGCCGTTATGAGAGGGGCGGATTCATACGGTCGTTGCAACGAAACCGTTGAAGGGGTGTTGCGATGCCGGCGGGGTACGTTTT
TGGGGATGCGGTCAGGGACGGGTTCTTTGCGCTTTTGCGGCAGGGGGCCTCGATCAGTGAGACGTGCCGCGTGTCGGGCCTGTGGTCCTCTACGGTGCGG
CATTGGGTCCGGAGGATGGGCCCTGTGGAGATGTCGAGAGGCAAACGTGAAGGACCGGTAGGGGCGCCGTTTCCGGACGGCGCCCCTGGCTCGGGCAGGT
TGAGCCTGTCGGAACGGGCGGTGATCATGGTCCGCCCGCGCGATGGCTGGTCCTACGCGGCGATCGGCAGGGAACTGGGCCGGGACCGATCGGTGATCTG
GCGCGAGGCCAGGCGGAACTGCTGCGAGGACGGCACATACCAGTCCGACGTCGCGCAGTTGAAGGCCGGGCAGAATGCCCGCCGGCCCAAGGAGCATAAA
CTCGCCCATAAGCCGCTGGCCCGGTTCGTGGAGTCCGCCATGGACGAGGGCTGGTCCCCGCAGCTGTGCTCGCTGGTGCTGGCCCGTGCTTTCCCGGACG
ATGAGAGGATGCAGATCAGCCACGAGACGATCTACCAGGCCATTTACGTCCAGGGCCGCGGACATGTCCGCCAGGACCTGTACCGGCAGTTGAGCACCGG
CCGGGCCAAACGGGTCAGCGATGGACGCGGCCGGGGCCGGAACAACAGCCCGTTCAAGGACGCGCTGAAAATCCCCGAACGCCCGGCCGAAGCCGCGGAC
CGGGCCGTACCCGGACACTGGGAATGCGACTTGATCCTTGGCTCGGTCGCCAGCAACTCAGCGATCGGAACCTGTGTTGAACGCTCGACCCGGTACACCA
TGCTGCTGCACCTGCCCAACGGCCACAGCGCAGACGAGGTCGCCAGAGCCATGATCACCGCGTTTGCGGAACTGCCGGCGGACCTGCGCAAGACCCTGAC
CTACGACCGCGGCATCGAGATGGCCCGCTACGCCCAAATCCAGATAGCGATCGATGCGGACGTCTATTTCTGCGACCCCCACTCGCCCTGGCAACGAGGC
ACCAACGAGAACACCAACAGACTCCTGCGGCACTGGTTCGCAAAAAGCACGGACCTGTCCGTCCACACGGCAAAGGACCTCAAACGGGTTCAGGACAGCC
TCAACAACCGGCCACGCCCCACCCTCGGCCTCGCAACCCCCAAGCAGAAATTCAACGAACTCCTCCTCGCCGCAGCAGCCTAACCGTTGCAACCACCACT
TGACTTTCCAAGGTCAAAACGGCAATTACCCAGCAATCGAT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1203 bp400 aa811283+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPAGYVFGDAVRDGFFALLRQGASISETCRVSGLWSSTVRHWVRRMGPVEMSRGKREGPVGAPFPDGAPGSGRLSLSERAVIMVRPRDGWSYAAIGRELG
RDRSVIWREARRNCCEDGTYQSDVAQLKAGQNARRPKEHKLAHKPLARFVESAMDEGWSPQLCSLVLARAFPDDERMQISHETIYQAIYVQGRGHVRQDL
YRQLSTGRAKRVSDGRGRGRNNSPFKDALKIPERPAEAADRAVPGHWECDLILGSVASNSAIGTCVERSTRYTMLLHLPNGHSADEVARAMITAFAELPA
DLRKTLTYDRGIEMARYAQIQIAIDADVYFCDPHSPWQRGTNENTNRLLRHWFAKSTDLSVHTAKDLKRVQDSLNNRPRPTLGLATPKQKFNELLLAAAA

 

Blast result :
Comments
ISAcl1 is 62% aa similar to ISLxc3.
References
1] ISfinder annotation (2009)

2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Goltsman,E., Clum,A., Larimer,F.,
Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Jansson,J. and Richardson,P. (2009) Direct Submission to GenBank.