ISAau3

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008712 ND Arthrobacter aurescens
Arthrobacter aurescens TC1 plasmid TC1
DNA section
IS Length : 1205 bp

Ends


IR Length : 25/36

IRL : GGAATCTCTGCACGAATCCCCCGAATCCGTGGTTGCCTGAATCCGTATGA
IRR : GGATGGTCTGCACGAATCACTTTTGACCGTGGTTGCGAGTTGACTGTCAT

Insertion site


Left flankDirect repeatRight flankDR Length
ATCTTACGCGTTAGGGTGCCGCTC4

DNA sequence

GGAATCTCTGCACGAATCCCCCGAATCCGTGGTTGCCTGAATCCGTATGAACCGCGACGATGTGAAGCATGAAGCAAACGAGCCTTGGCCTGCCGAACAC
CTCGCGGCGAACGCGCAAGCGCGAATTCCTGGAGTCGATGGAGCGCGTGGTTCCCTGGAGCGAACTGGTGTCGCTGATCGAGCCCTATGCACCGCAGTCC
GGCCACCGCGGCCAGCAGCCCTTCGCGGTAGAGGCGATGCTGCGCATCCACTTCATGCAGCAGTGGTTCAATCTCAGTGATCCGGCGATGGAAGAGGCGC
TGCACGACGTGCCGGTGTTCCGTGACTTCGCGGGCCTGTCCAACTGGGCCGATGCCATGCCCAGCGAATCCAGCATCCTGCGCTTTCGCCATCTGCTGGA
GCGCCACAAGCTGGCCGATCAGATCCTTGCCACGGTCAATGGGTTGCTCAGCGCCAAGGGGCTGCTGCTCAAGGCCGGCACGGTGGTGGACGCCACGCTG
ATCGCGGCTCCCAGTTCGACGAAGAACCGTGAGGGAGAGCGAGACCCCGAGATGCACCAGAGCAAGAAAGGACAGCAGTGGTATTTTGGGATGAAGGCGC
ACATCGGCGTGGATGCCGAGTCCGGTCTGGTGCACACGGTGCAAGGAACGTCGGGCAACGTCAATGACGTCGTCGAGGCCAACAGCCTGCTGCACGGCGA
AGAGACGGTGGTGTTTACCGATGCCGGCTACCAAGGAGCGGACAAGCGTCCTGATGCCAAGCCTGGTGTGACGTGGCATGTGGCAATGCGCCCGGGCAAG
CGGCGCGCACTGGACACGGAGCACAACGAAGCCGATGCCTTGCTTGAGAAGATCGAGCGGATCAAGGCGGGTGTGCGCGCGAAGGTGGAGCACCCGTTTC
GGGTGATCAAGCGCCAGTTCGGACACGTGAAGGTGCGCTACCGGGGATTGAAGAAGAACACGGCGCAGTTGAAGACGCTGTTCGCGCTGTCCAACCTGTG
GATGGTGAGGAACAAGGTCGGGAGCTTGGTGGGATGAGTGCGCCCGCAGGCTGCCAAAAGGCAGCGAAGACCGCAGAAAAGCGGTGATTGAGGGGCACCG
AGAGGCGATTCGCAGCAACACGGAGCCGCGATTCACTGCAAATCGACTTGCTCCCATGACAGTCAACTCGCAACCACGGTCAAAAGTGATTCGTGCAGAC
CATCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
969 bp322 aa691037+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSLIEPYAPQSGHRGQQPFAVEAMLRIHFMQQWFNLSDPAMEEALHDVPVFRDFAGLSNWADAMPSESSILRFRHLLERHKLADQILATVNGLLSAKGLL
LKAGTVVDATLIAAPSSTKNREGERDPEMHQSKKGQQWYFGMKAHIGVDAESGLVHTVQGTSGNVNDVVEANSLLHGEETVVFTDAGYQGADKRPDAKPG
VTWHVAMRPGKRRALDTEHNEADALLEKIERIKAGVRAKVEHPFRVIKRQFGHVKVRYRGLKKNTAQLKTLFALSNLWMVRNKVGSLVG

 

Blast result :
Comments
ISAau3 is 81% aa similar to ISRso18.
References
1] ISfinder annotation (2009)
2] Mongodin,E.F., Shapir,N., Daugherty,S.C., DeBoy,R.T., Emerson,J.B., Shvartzbeyn,A., Radune,D., Vamathevan,J., Riggs,F., Grinberg,V., Khouri,H., Wackett,L.P., Nelson,K.E. and Sadowsky,M.J. (2006) PLoS Genet. 2 (12), E214