ISAar42

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Arthrobacter arilaitensis
Arthrobacter arilaitensis RE117
DNA section
IS Length : 1443 bp

Ends


IR Length : 25/33

IRL : GGATATCGGGCTCTTCGCAGTTGACGGTGTAGTCGGGGGTGGGCGGCTGG
IRR : GGCTTTCGCGGCTCTTCGGAATCAAGGGTGTAGGTGAGGTCTGAACCCTC

Insertion site


Left flankDirect repeatRight flankDR Length
CTCGACGCCTAAAGCGAAGA0

DNA sequence

GGATATCGGGCTCTTCGCAGTTGACGGTGTAGTCGGGGGTGGGCGGCTGGTTCGTGGATAGACGTCGAGGTCTTCCAAGATGGAAGTTCCTACACTGCTC
ATCCGCCGGAAGACCTCGACTTGCACCACGCTACCTTCGCCGCGCCCGACCTGACCACGTTCTGCCGTCTCGACGAGCTCGGCCTCGAGGCCGTTGGGCA
GCGTCTCGAGCCAGATCGGGCGGTGATCGAGTGCCGCGTCGTCGAGGACGACCCGTGGTGTCGGAAGTGCGGCGCCGAGGGCGCGCCACGGGACACGGTG
ACGCGCCCGCTGGCGCATGAACCGTTCGGGCACCGGCCGACGACGCTGCTAATCCGGGTGCGCCGCTACCGGTGCGTGTCCTGCCGCCGCACCTGGCGGC
AGGACACGTCGAAGGCGGCCGCGCCCCGGGCGAAGATCTCCCGCGGCGGGATCGGGTGGGCACTCACTGCGATCGTGGTCGACCACCTCACCGTCTCGCG
CGCCGCCGCCGGTCTCGGGGTGTCGTGGCACACCGCGAACACCGCGATCCTCGCCGAAGGCAAGCGGCGCCTCATCGACGACCCGGCCCGGTTCGACGGG
GTCACCACGATCGGCGTCGACGAGCACGTCTGGCGACACACCCGATTCGGCGACAAGTACGTCACCGTGATCATCGACCTCACGCCCGCCCGCGAGAAGA
CCGGCCCCGCGCGCTTGCTGGACATGATCGAAGGCCGCTCCAAGTCCGTCTTCAAGCAGTGGCTCGCGGGCCGCCCGAAGCAGTGGCGCGACGGGATCGA
GGTGGTCGCGATGGACGGGTTCAGCGGGTTCAAGACCGCCGCCGCGGAAGAGCTCCCCGACGCGGTTGCGGTGATGGACCCAATCCATGCCGTCCGTCTC
GCTGGCGACGCGCTGGATGCCTGCCGGCGCCGGGTCCAGCAGGACACCACCGGGCACCGCGGGATGAAGGGCGACCCGCTCTACAAGGCCCGCCGCACCC
TCCACACCGGCGCGAGCCTGCTCACCGACAAGCAGCGGGCACGCCTGAACGCGGTGTTCGCGAGCGAGGAGCATGTCGAGGTCGAGGCGACCTGGGGCAT
CTACCAGCGCATCGTCGCCGCCTACCGGGAACCCGACAAGAAGAAGGCCAGGCAGGCCATGCAGGCGGTGATCGCCACGATCACCACCGGGGTTCCCGCG
GCGCTCGTGGAGATCCGCAAGCTCGGCCGCACCATGAAGCAACGCGCCGCCGACATCCTCGCGTTCTTCGACCGGCCCGGCACCAGCAACGGCCCGACCG
AGGCGATCAACGGCCGCCTCGAACACCTCCGCGGCTCCGCGCTCGGCTTCCGCAACCTCACCCACTACATCGCCAGGTCGCTGCTCGAAGCCGGAGGGTT
CAGACCTCACCTACACCCTTGATTCCGAAGAGCCGCGAAAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1302 bp433 aa1211422+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

LHHATFAAPDLTTFCRLDELGLEAVGQRLEPDRAVIECRVVEDDPWCRKCGAEGAPRDTVTRPLAHEPFGHRPTTLLIRVRRYRCVSCRRTWRQDTSKAA
APRAKISRGGIGWALTAIVVDHLTVSRAAAGLGVSWHTANTAILAEGKRRLIDDPARFDGVTTIGVDEHVWRHTRFGDKYVTVIIDLTPAREKTGPARLL
DMIEGRSKSVFKQWLAGRPKQWRDGIEVVAMDGFSGFKTAAAEELPDAVAVMDPIHAVRLAGDALDACRRRVQQDTTGHRGMKGDPLYKARRTLHTGASL
LTDKQRARLNAVFASEEHVEVEATWGIYQRIVAAYREPDKKKARQAMQAVIATITTGVPAALVEIRKLGRTMKQRAADILAFFDRPGTSNGPTEAINGRL
EHLRGSALGFRNLTHYIARSLLEAGGFRPHLHP

 

Blast result :
Comments
ISAar42 is 80% aa similar to ISBli1.
References
[1] ISfinder annotation (2009).