ISVch8
- Family IS5
- Group IS903
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
GQ427177 | ND | Vibrio cholerae | Vibrio cholerae 2356 |
DNA section
IS Length : 1053 bp
Ends
IR Length : 18/19
IRL : GGCTTTGTTGCGTAAATCGATGGAACTAAATCAATAGCTTACGATCTGAT
IRR : GGCTTTGTTGCGTAATTCGTTTTCGAAGCCGAGTAGCCCTACTTAGATTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CAGATGTTTAG | TTTCAGCAA | TGTCACCTAAA | 9 |
DNA sequence
GGCTTTGTTGCGTAAATCGATGGAACTAAATCAATAGCTTACGATCTGATCGGCTACATTCATTCACTCTGTAGCCTCATGCCGAAACCACGTTACAAAA
CAAACAACTGGAAACAATACAATCAAGCTCTCATCAATCGTGGTTCTCTGACTTTTTGGATTGACGAAGAAGCGATAAGTGAGTGGAAACAAGGGAAGCA
AAACAAGCGTGGGAGACCTCGTGTTTTCAGTGATTTAGCCATCACTACTGCTTTGATGGTAAAGCGTATCTTTTCCATGCCACTGCGTGCTTCGCAAGGC
TTTATGGATTCCGTTTTTCAACTTGCCCAACTCCCACTGCGCTGCCCACACTACAGTTGTATCAGTCGTCGAGCCAAAGACGTTAACGTGAGTTTCAAAA
CAAAAACCAAAGGACCGATTCAGCACCTTGCTATCGATGCTACTGGCCTCAAGGTTTATGGTGAGGGTGAGTGGAAAGTCAAAAAACATGGCACGGATGG
TAAACGCAGAGTGTGGCGAAAATTACATCTCGCAGTAGATACGAGTACACACGAAATTATTGCCGCAGAGTTGAGCTTATCTTCGGTCACTGATGCAGAG
GTGCTGCCAAACTTGCTCAAGCAAACACGGCGAAAAATCCTTGAGATATCAGGCGATGGTGCTTATGACACAAGGGGTTGCCACGCAGCAATCCGCATTA
AACGAGCGATAGCGCTCATCCCTCCACGAGAAGGCGCAGCATTCTGGGAGCGAGGTCATCCAAGAAACTTAGCGGTGGGTTGTCAAAAGTTATACGGTTC
GAATAAACATTGGAAAGAGCGGTATGGCTACCACAAGCGTTCACTATCCGAGACGGCGATGTATCGCGTGAAACAGTTGCTTGGTGGACGATTAAGTCTA
AGAAATTACAACGCACAAGTTGGTGAAACTTACGCGATGATCAAAGCGTTAAATAAGATAACAGGGCTTGGTATGCCTAAAACTTGCCGTATTGGCTAAC
TATCAATCTAAGTAGGGCTACTCGGCTTCGAAAACGAATTACGCAACAAAGCC
CAAACAACTGGAAACAATACAATCAAGCTCTCATCAATCGTGGTTCTCTGACTTTTTGGATTGACGAAGAAGCGATAAGTGAGTGGAAACAAGGGAAGCA
AAACAAGCGTGGGAGACCTCGTGTTTTCAGTGATTTAGCCATCACTACTGCTTTGATGGTAAAGCGTATCTTTTCCATGCCACTGCGTGCTTCGCAAGGC
TTTATGGATTCCGTTTTTCAACTTGCCCAACTCCCACTGCGCTGCCCACACTACAGTTGTATCAGTCGTCGAGCCAAAGACGTTAACGTGAGTTTCAAAA
CAAAAACCAAAGGACCGATTCAGCACCTTGCTATCGATGCTACTGGCCTCAAGGTTTATGGTGAGGGTGAGTGGAAAGTCAAAAAACATGGCACGGATGG
TAAACGCAGAGTGTGGCGAAAATTACATCTCGCAGTAGATACGAGTACACACGAAATTATTGCCGCAGAGTTGAGCTTATCTTCGGTCACTGATGCAGAG
GTGCTGCCAAACTTGCTCAAGCAAACACGGCGAAAAATCCTTGAGATATCAGGCGATGGTGCTTATGACACAAGGGGTTGCCACGCAGCAATCCGCATTA
AACGAGCGATAGCGCTCATCCCTCCACGAGAAGGCGCAGCATTCTGGGAGCGAGGTCATCCAAGAAACTTAGCGGTGGGTTGTCAAAAGTTATACGGTTC
GAATAAACATTGGAAAGAGCGGTATGGCTACCACAAGCGTTCACTATCCGAGACGGCGATGTATCGCGTGAAACAGTTGCTTGGTGGACGATTAAGTCTA
AGAAATTACAACGCACAAGTTGGTGAAACTTACGCGATGATCAAAGCGTTAAATAAGATAACAGGGCTTGGTATGCCTAAAACTTGCCGTATTGGCTAAC
TATCAATCTAAGTAGGGCTACTCGGCTTCGAAAACGAATTACGCAACAAAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
921 bp | 306 aa | 79 | 999 | + | No |
Chemistry : DDE
ORF sequence :
MPKPRYKTNNWKQYNQALINRGSLTFWIDEEAISEWKQGKQNKRGRPRVFSDLAITTALMVKRIFSMPLRASQGFMDSVFQLAQLPLRCPHYSCISRRAK
DVNVSFKTKTKGPIQHLAIDATGLKVYGEGEWKVKKHGTDGKRRVWRKLHLAVDTSTHEIIAAELSLSSVTDAEVLPNLLKQTRRKILEISGDGAYDTRG
CHAAIRIKRAIALIPPREGAAFWERGHPRNLAVGCQKLYGSNKHWKERYGYHKRSLSETAMYRVKQLLGGRLSLRNYNAQVGETYAMIKALNKITGLGMP
KTCRIG
DVNVSFKTKTKGPIQHLAIDATGLKVYGEGEWKVKKHGTDGKRRVWRKLHLAVDTSTHEIIAAELSLSSVTDAEVLPNLLKQTRRKILEISGDGAYDTRG
CHAAIRIKRAIALIPPREGAAFWERGHPRNLAVGCQKLYGSNKHWKERYGYHKRSLSETAMYRVKQLLGGRLSLRNYNAQVGETYAMIKALNKITGLGMP
KTCRIG
Blast result :
Comments
ISVch8 is 96% aa similar to ISV-M52.
References
1] Margaret Whipp (2009) Direct submission.