ISVch8

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
GQ427177 ND Vibrio cholerae
Vibrio cholerae 2356
DNA section
IS Length : 1053 bp

Ends


IR Length : 18/19

IRL : GGCTTTGTTGCGTAAATCGATGGAACTAAATCAATAGCTTACGATCTGAT
IRR : GGCTTTGTTGCGTAATTCGTTTTCGAAGCCGAGTAGCCCTACTTAGATTG

Insertion site


Left flankDirect repeatRight flankDR Length
CAGATGTTTAGTTTCAGCAATGTCACCTAAA9

DNA sequence

GGCTTTGTTGCGTAAATCGATGGAACTAAATCAATAGCTTACGATCTGATCGGCTACATTCATTCACTCTGTAGCCTCATGCCGAAACCACGTTACAAAA
CAAACAACTGGAAACAATACAATCAAGCTCTCATCAATCGTGGTTCTCTGACTTTTTGGATTGACGAAGAAGCGATAAGTGAGTGGAAACAAGGGAAGCA
AAACAAGCGTGGGAGACCTCGTGTTTTCAGTGATTTAGCCATCACTACTGCTTTGATGGTAAAGCGTATCTTTTCCATGCCACTGCGTGCTTCGCAAGGC
TTTATGGATTCCGTTTTTCAACTTGCCCAACTCCCACTGCGCTGCCCACACTACAGTTGTATCAGTCGTCGAGCCAAAGACGTTAACGTGAGTTTCAAAA
CAAAAACCAAAGGACCGATTCAGCACCTTGCTATCGATGCTACTGGCCTCAAGGTTTATGGTGAGGGTGAGTGGAAAGTCAAAAAACATGGCACGGATGG
TAAACGCAGAGTGTGGCGAAAATTACATCTCGCAGTAGATACGAGTACACACGAAATTATTGCCGCAGAGTTGAGCTTATCTTCGGTCACTGATGCAGAG
GTGCTGCCAAACTTGCTCAAGCAAACACGGCGAAAAATCCTTGAGATATCAGGCGATGGTGCTTATGACACAAGGGGTTGCCACGCAGCAATCCGCATTA
AACGAGCGATAGCGCTCATCCCTCCACGAGAAGGCGCAGCATTCTGGGAGCGAGGTCATCCAAGAAACTTAGCGGTGGGTTGTCAAAAGTTATACGGTTC
GAATAAACATTGGAAAGAGCGGTATGGCTACCACAAGCGTTCACTATCCGAGACGGCGATGTATCGCGTGAAACAGTTGCTTGGTGGACGATTAAGTCTA
AGAAATTACAACGCACAAGTTGGTGAAACTTACGCGATGATCAAAGCGTTAAATAAGATAACAGGGCTTGGTATGCCTAAAACTTGCCGTATTGGCTAAC
TATCAATCTAAGTAGGGCTACTCGGCTTCGAAAACGAATTACGCAACAAAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
921 bp306 aa79999+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPKPRYKTNNWKQYNQALINRGSLTFWIDEEAISEWKQGKQNKRGRPRVFSDLAITTALMVKRIFSMPLRASQGFMDSVFQLAQLPLRCPHYSCISRRAK
DVNVSFKTKTKGPIQHLAIDATGLKVYGEGEWKVKKHGTDGKRRVWRKLHLAVDTSTHEIIAAELSLSSVTDAEVLPNLLKQTRRKILEISGDGAYDTRG
CHAAIRIKRAIALIPPREGAAFWERGHPRNLAVGCQKLYGSNKHWKERYGYHKRSLSETAMYRVKQLLGGRLSLRNYNAQVGETYAMIKALNKITGLGMP
KTCRIG

 

Blast result :
Comments
ISVch8 is 96% aa similar to ISV-M52.
References
1] Margaret Whipp (2009) Direct submission.