ISHwa3

  • Family IS5
  • Group ISH1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FR746099 ND Haloquadratum walsbyi
Haloquadratum walsbyi
DNA section
IS Length : 940 bp

Ends


IR Length : 21/25

IRL : GGCTGTGTTGAATCGCTAGGCGGCGTCGGGATGGGTCGTTAAATCAAAGG
IRR : GGCTGTGTTGAATCGCCATACAGCGGTGGAATTCACTGTTTCACGGCTCG

Insertion site


Left flankDirect repeatRight flankDR Length
CACCGTATGGCTTTATTCCATCAATCAA8

DNA sequence

GGCTGTGTTGAATCGCTAGGCGGCGTCGGGATGGGTCGTTAAATCAAAGGAGTTGAAGCGGGAGACTGCGAATGTCCATGACGCAAATCTCCCGCTTCAC
TAGCGAGATTGTCCCGATTTCTCAAAGGGTTACTGGCGACGGAGACGAATCCGCCGCCCCGGAAGGTGGCGGCGGATTCGCCGACTACGCGCTCGTTTCC
CTCCATTGTCTCCGAATTTACCTCGACACGTCCTACCGGATGACGATTGACCTGCTGAAGGAGATGCCACAAATAACCGGGGAGATCGGCCTTGAAGCGG
CCGATCTCCCCTCACCATCCACGTTGTGTAAGGCGTTCGACCGGATCAGCATGAGCGTCTGTCGAGTGCTGCTGCGCCAGTCGGCGCAGCTGCACGACCC
CTCCGAACACGGTGCGATCGACGCTACCTTCTACGAACGCTCAGCTGCGAGCCGCCACTACTGCCAGCGAATCAGCTACCGCGTGCAGAAATTGAAGGTC
ACGAAACTCGTCGATACAGCGTCGCAGGCCGTCCTCGACGTACACTGTTCGACGAACCGGAAGGGAAGTGACGCAGACCTTGCCGAGCAGATCGCCCGCC
GAAACGCGGGCGATCTGCGGTCGCTCGCCGCCGACAAGGGATACGACAAGCAATCGCTCCGCGAATCTCTTCGTGACCTCGGGATTCGCCCGCTCATCAA
ACATCGTATCTTCGCTCCGTACGACCACGCTCATAACGCCAGAATCGACGAACAACGCTACAATCAGCGCTCAATGACCGAGACAGTGAACTCGGCTGTC
AAGCGCTCGCTCGGCTTCGCCGTGCGAGCGCGTACTTGGTTCCGTGAGTTCCGAGAAATCGCGCTGATGTGTGTGGTCTATAACATCAAGCGAGCCGTGA
AACAGTGAATTCCACCGCTGTATGGCGATTCAACACAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
831 bp276 aa78908+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTQISRFTSEIVPISQRVTGDGDESAAPEGGGGFADYALVSLHCLRIYLDTSYRMTIDLLKEMPQITGEIGLEAADLPSPSTLCKAFDRISMSVCRVLLR
QSAQLHDPSEHGAIDATFYERSAASRHYCQRISYRVQKLKVTKLVDTASQAVLDVHCSTNRKGSDADLAEQIARRNAGDLRSLAADKGYDKQSLRESLRD
LGIRPLIKHRIFAPYDHAHNARIDEQRYNQRSMTETVNSAVKRSLGFAVRARTWFREFREIALMCVVYNIKRAVKQ

 

Blast result :
Comments
ISHwa3 is 78% aa similar to ISH9.
References
1] Dyall-Smith,M.L., Pfeiffer,F., Klee,K., Palm,P., Gross,K., Schuster,S.C., Rampp, M., and Oesterhelt,D. (2011) PLoS One 6: e20968