ISSoc3

  • Family IS200/IS605
  • Group IS605
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007775 ND Synechococcus sp.
Synechococcus sp. JA-3-3Ab
DNA section
IS Length : 1806 bp

Ends


Left end : CAGAACCTCCGGGGTACTCCCGCCACAGCGCAGCTTGGCGGGTGGGGGATAGGCGGTGAGACGAAGGGGTTCAATGCCCCTGAGTCTCACTATCTGGGCG II struct. : Yes
Right end : GGATCCTGGTTTACCAGTCCGTTGAAGCAGCAACTCCGGGAAGTGATTCTCGGAAGCTCCCGTCTACAGCCCGTCAGGGCCTAGCGGGAGAGGATGTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
AGCCGTGACTCCATTGGGTGCAAATCAC
TGCAACGAACCCATTTTCTCAGCCTCAC
GCTAACGGCGCCATGTTTCGGCGTTCAC
GGGCGGATTTCCATACTCTTGTCTTCAC
TCCAAGTATTCCATCACGCTCCTCTCAC
TGGCCACAGTCCATTCTCAGCTTGTCAC
TCCCTCGCCTCCATTTCAGTCGGCTCAC
TCTGTTTTCCCCATCGAGGAGGAGTCAC
GCTCTGGAATCCATGAGCTGCCAATCAC
CATCCACCAGCCATGCCTCATTGCTCAC
TCCCGACTCCCCATTTGGATACGCTCAC
GAAAAAGCTGCCATTCAAGCGAGCTCAC
CCAAGTTCGGCCATTGCAAGCAAATCAC
AGGAGGTTGTCCATTTTCACTTTTTCAC
GCTATATTCTCCATTTTAGGGGGCTCAC
CCGCTCCTGCCCATAGGACGTATGTCAC

DNA sequence

CAGAACCTCCGGGGTACTCCCGCCACAGCGCAGCTTGGCGGGTGGGGGATAGGCGGTGAGACGAAGGGGTTCAATGCCCCTGAGTCTCACTATCTGGGCG
ATGCCTGCTGCTCAACATACTTCTTCAACTCCTCAACGGTGACCCCACCACAAGAGGCAACAAAATAGGCCCCTGTCCAAAATACAGGCTTGCTGTAGAA
CCGTGCCACCTCTGTGGCGAACTCTTTGCGAATCAACCGGCTGGAGACTGTTTTCAGGTTGTTCACCAGCTTCGAGACCTGAACATCCGGCGGAAAACTC
ACCAACAGATGCACATGGTCCGCCTCACCGTCGAACTCCACCAAGGAACAGCGCCACTTTTGGCAGGTCGCTCGAAATATATCTTCCAGCCTCTGCAACA
TTGGAGCAGTTATCACCCGACGACGGTACTTTGTCACCAGCACCAAGTGGATTTGTAGGCTGTAAACAGAACGATGGCCTATGTTGTAGCTCATTGCGCT
AAATGCTAGAACCGTCTCATGATTATCACCCACGAGTACCGGATCCTGCCCAGCGACGACCAAGCCGCTCTGATGACCGAGTGGCTGGAATTGTTGCGGC
GGCAGTGGAACGACGCTCTGGGGCAGAGACTGGACTGGCTGACCGCAACCCGTTGCCCAATTGACCGCTGCAGTCTTGTCTCTTGTCCGTTGCCTGTGTC
AGAACCCCCGCTGGAGCCGAATTATTATCGGCAGGCGGGATCCCTCAAACAAATCAAGCAACTGTTCCCGGCCTACCGGGGCATTTACGCCGAGGTGCTG
CAGCAAAACTTGATGCGGCTGGACAAGGCGTGGAAAGCGTGGCGGGAGCCGGATAGCACAGGCAAGCGGCGGGGGCGGCCTCGCTTCAAAAAAGCGGGGG
AGTTGAGATCCTTCACATTCCCCCGCATCAATTGCCCCAAGGCGGGAGCGCATCTGGAAGGGGAGACTCTGCGGCTGAGCAAGATTGGCTCGATGCCTGT
GGTGCTGCACCGCCCCTTACCAGAGGGGTTTGTGCCCAAAACCTGCACAGTGGTGCGCAAGGCCGATGGGTGGTATGTCTGCATTACTTTGGAGGACAAA
AGCGTCCCTTCCCCAGAGCCTGTGCCGATCAAAAAGGCGGTGGGCATTGATGTGGGATTGGATAGGTTTCTCACCACCAGCGATGGGGAGGTGGTGCCTA
TCCCGCGGCACTACCGCCGAGCTCAAAAGCACTTGGCCCGACAGCAGCGGCAACTGAGCCGCAAAGTGAAGGGGTCCGCCAACTGGAAGAGACAAGCCAC
GAAAGTTGCTTGTTTGCAGTTGCACGTTGCCCGACAACGCAAAGCGTTCCACTACCAAGTGGCGCACTGGCTGGTGGAGCAATACGACCTGTTGGTGGTG
GAGGATCTCAACGTCCGAGGGCTGGCACGGACTCGGTTGGCTAAATCGATTTTGGATGCGGCTTGGGGACGATTTCTTGACATTCTGACAGCAGTGGCGG
TCAAACGCGGCAAACAGGTGTTGAGAGTGGATCCCCGTGGTACGTCCCAAAATTGTTGTGTTTGTGAGGAGCGTGTTCCCAAGACCTTGTCGGAACGGGT
GCATGATTGCCCCCGTTGCGGGTCGTGGGACAGAGACTTGAACGCTGCTATCGAGATTTTGAAGCGAGGACTCAGGGCGGTGGGACTGCCGCTCTCTGGC
TGTGGAGGATCCTGGTTTACCAGTCCGTTGAAGCAGCAACTCCGGGAAGTGATTCTCGGAAGCTCCCGTCTACAGCCCGTCAGGGCCTAGCGGGAGAGGA
TGTCAC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
474 bp157 aa56390-No
ORF function : Transposase
Chemistry : Y1

ORF sequence :

MVVAGQDPVLVGDNHETVLAFSAMSYNIGHRSVYSLQIHLVLVTKYRRRVITAPMLQRLEDIFRATCQKWRCSLVEFDGEADHVHLLVSFPPDVQVSKLV
NNLKTVSSRLIRKEFATEVARFYSKPVFWTGAYFVASCGGVTVEELKKYVEQQASPR

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1272 bp423 aa5191790+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MIITHEYRILPSDDQAALMTEWLELLRRQWNDALGQRLDWLTATRCPIDRCSLVSCPLPVSEPPLEPNYYRQAGSLKQIKQLFPAYRGIYAEVLQQNLMR
LDKAWKAWREPDSTGKRRGRPRFKKAGELRSFTFPRINCPKAGAHLEGETLRLSKIGSMPVVLHRPLPEGFVPKTCTVVRKADGWYVCITLEDKSVPSPE
PVPIKKAVGIDVGLDRFLTTSDGEVVPIPRHYRRAQKHLARQQRQLSRKVKGSANWKRQATKVACLQLHVARQRKAFHYQVAHWLVEQYDLLVVEDLNVR
GLARTRLAKSILDAAWGRFLDILTAVAVKRGKQVLRVDPRGTSQNCCVCEERVPKTLSERVHDCPRCGSWDRDLNAAIEILKRGLRAVGLPLSGCGGSWF
TSPLKQQLREVILGSSRLQPVRA

 

Blast result :
Comments
ISSoc3 is 74% (ORFA, the transposase) aa similar to IS1253A and 53% (ORFB) to ISMma22.
References
1] ISfinder annotation (2009)
2] Bhaya,D., Grossman,A.R., Steunou,A.S., Khuri,N., Cohan,F.M., Hamamura,N., Melendrez,M.C., Bateson,M.M., Ward,D.M. and Heidelberg,J.F. (2007) ISME J 1 (8), 703-713
3] Allewalt,J.P., Bateson,M.M., Revsbech,N.P., Slack,K. and Ward,D.M. (2006) Appl. Environ. Microbiol. 72 (1), 544-550