ISAar41

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Arthrobacter arilaitensis
Arthrobacter arilaitensis RE117
DNA section
IS Length : 1346 bp

Ends


Left end : TCTAATGGTTATTGGCAGGTCTGGGACCCGCTGGCAGGATAGGTGCCACCAGCCACGATGTGACTCACACTAATTCTGTCCTTAGAGTATTCTGAGTGAC
Right end : AGCTACCGGGAAATCAAACGGGTGCTGAAACGGTACATCGTTCGGAAAGTTTTTCGTCGGCTACGCGTGCTGGTCCCTTGACAGAACCCATAGAAGGGTC

Insertion site


Left flankDirect repeatRight flankDR Length
CCACTAATTCAGGCTAACCC0

DNA sequence

TCTAATGGTTATTGGCAGGTCTGGGACCCGCTGGCAGGATAGGTGCCACCAGCCACGATGTGACTCACACTAATTCTGTCCTTAGAGTATTCTGAGTGAC
TTTAGCCTGACGTGTCCGTCGTAGCTGGTGACACCAGCCCGGCCCCTTGACATGGCTTCATAGAAGGCCGTCCGCACCCCACCGGGTGCGTGACTCATTA
GAGAATCGCCTGCCAAGAACTCTTTCCCGGACCGGTGCCAACCATAACGGCTACCAACCGATGAAGGAGGCGAAACCGTCATGACCATCGTTGCAGAAAC
ATACGACTACGTCATCGGAATCGACACCCACGCACGAACCCACACCTACGCCATAATCAACACCCGCACCGGGAGCAGAGAGGCCTGCCAGGCCTTTCCG
ACCAGCCCTGCCGGCATGAACCGGACCTTGGCTTGGATCACCAAACGCACTACCGGCACCCTGCTGGCCGCAGTGGAAGGAACCCGGTCTTACGGGGCCA
CCATCACCCATGCCCTGACCATGGCTGGGTTCCCCGTGGTCGAGGTCAAACCACCACGTAGACAGGCCCGTGCCAGGGTGGGCAAGACCGACGAGATCGA
CGCCACCGCAGCGGCCATGGGCATTCTTTATCAGGACACCGAGCGTCTGCTTACGCCCCGCGCCGAAGGCACGCGCTCAGCGTTGAACGTACTGGTTGCC
AGCCGCGAACGCATCGACGCTGAACGCACCCGGAACCGCAATGCCCTGACGGCTCTGGCACGAGAAATCGACCTCGGTGTTGATGCGCGTAAAGCACTCA
CTGACATGCAGGTCAAACAGATCAGCGCCTGGCGTGAGCACCCCACCGATTCGGTAGCGCAACGCTACGCGAGGGCTGAGGCCAGTCGCTTGGCCACGGC
GGTGCTTGACGCCGACAAGCTACTGGCCGCAAACAAGACACAAATGGCTGAATTGGATGAGCAGATGGCCCCCGGGCTGGCCGCCGAGTTCGGGTACGGG
CCGGTGACTGTTGCGTGGATCCTGATCGCTTACTCGCACACAGGCAGAGTACATTCTGAAGCGGCATTCGCGTCTATGGCTGGGGTCGCTCCGTTGCAGG
TATCCTCCGGGAACACGGTACGGCACCGGCTTAATCGGCATGGTGACAGGATGCTGAATCAAGCGGTGGACGTCATTGCCAAGGTACGGATGCAGTTCGA
TCCTCAGACCAAGGACTACGTGGAGAAACGCAAGGCTGAGGGGCTGAGCTACCGGGAAATCAAACGGGTGCTGAAACGGTACATCGTTCGGAAAGTTTTT
CGTCGGCTACGCGTGCTGGTCCCTTGACAGAACCCATAGAAGGGTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1047 bp348 aa2811327+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MTIVAETYDYVIGIDTHARTHTYAIINTRTGSREACQAFPTSPAGMNRTLAWITKRTTGTLLAAVEGTRSYGATITHALTMAGFPVVEVKPPRRQARARV
GKTDEIDATAAAMGILYQDTERLLTPRAEGTRSALNVLVASRERIDAERTRNRNALTALAREIDLGVDARKALTDMQVKQISAWREHPTDSVAQRYARAE
ASRLATAVLDADKLLAANKTQMAELDEQMAPGLAAEFGYGPVTVAWILIAYSHTGRVHSEAAFASMAGVAPLQVSSGNTVRHRLNRHGDRMLNQAVDVIA
KVRMQFDPQTKDYVEKRKAEGLSYREIKRVLKRYIVRKVFRRLRVLVP

 

Blast result :
Comments
ISAar41 is 65% aa similar to ISAar29.
References
1] ISfinder annotation (2009).