ISAar39

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Arthrobacter arilaitensis
Arthrobacter arilaitensis RE117
DNA section
IS Length : 1433 bp

Ends


IR Length : 21/25

IRL : GGCTCTTCGCAGATGAGGGTGTAGCGGTCGGTGGCGGGGTGGGCGCGTCG
IRR : GGCTCATCGCATTTGACGGTGTAGCAGGGGTCTGAATCCGCCGGTGTCGA

Insertion site


Left flankDirect repeatRight flankDR Length
CAGCATAAGGGCATATCTCA0

DNA sequence

GGCTCTTCGCAGATGAGGGTGTAGCGGTCGGTGGCGGGGTGGGCGCGTCGGTGCGGGGATAGACGTCGAGGTCTCCCGATGATGGAAGTTCTGACGCTCG
CCATCTGGAAGACCTCGACATGCCCCACGCTACCTTCTCGTCCCCTGATCTCGATGCCTTCTGCGGCCTGGACGGGCTCGGCCTCACAGCCACCGGCCAG
CGCATCGAGACGGGCCAGGCAGTTCTGGAGTGCCGGGTCCTCGCGGACGATCAGTGGTGCCATCGCTGCGGCCAGGCCGGAGTTCCTCGCGGCACGGTCC
TCAGGACGATCGTGCACGTCCCCCTCGGCTGGCGACCGACGATGCTGCAGGTCAGAGTGCGTCGCTACCGCTGCCCGGACTGCTGCACCGTGTGGCGTCA
GGACACCACAGCCGCTGCCGCGTCCCGCACGAAGCTGTCGCGCGACGCGGTCTTCTGGGCACTCAAGAGCGTGGTCATCGACCGGATGTCGATCGCGCGG
GTCGCCGAGAACCTCGGCACCGCCTGGCACACCGTGAACGACGCTGTCCTCGAAGCCGGCTCCGAGCTCCTGATCAACGATCCTGCCCGGTTCGAGGGGG
TCCGGGTCCTCGGCGTGGACGAGCACGTCTGGTCCCACACCAGAGGCGGTAACAAGTACGTCACCGTGATCATCGACCTGACCCCGGTCCGCGATGGCAC
CGGAGCCTCGAGGCTGCTGGACATGGTCCCCGGCCGTTCGAAGAAGGTGCTCAAGACCTGGCTCGACCAGCAGGAACAGGGCTTCCGCGACCGGATCGAG
ACCGTGGCGATGGACGGGTTCACCGGTTTCAAGACCGCCGCTGCGGAAGAGATCCCGCAGGCCGTCGCGGTGATGGATCCGTTCCACGTCGTCGCCCTGG
CCGGTGACGCACTGGACCGCTGCCGGCAACGGATCCAGCAGACCACCTGCGGGCATCGTGGCCGATCCGGGGATCCTCTCTACGGGATCCGCCGAGTCCT
CCGCACCGGCGCAGACCTCCTGACCGATCGCCAGTGCGGCCGCCTGAGCAGCGTGTTCGCCGCAGACGAGCACGCCGCAGTGGAGGCGACCTGGGGCATC
TACCAGCGGATCGTCCAGGCATACCGCAATCCCGATCGCGTTGCCGCCAAGCAGCAACTCACCGCCGTGATCCAGGACCTCGCCGGCAACGTTCCAGCCT
CGCTGACCGAGGTCATCACGCTCGGCCGCACTCTGAAACGCCGGGCCGGGGACGTGCTGGCCTACTTCGACCGGCCCGGCACCAGCAACGGCCCAACAGA
GGCTATCAATGGCCGCCTCGAGCACCTCCGTGGCACCGCGCTGGGCTTCCGCAACCTCGCCCACTACATCCTCCGATCCCTCCTCGACACCGGCGGATTC
AGACCCCTGCTACACCGTCAAATGCGATGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1311 bp436 aa1201430+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MPHATFSSPDLDAFCGLDGLGLTATGQRIETGQAVLECRVLADDQWCHRCGQAGVPRGTVLRTIVHVPLGWRPTMLQVRVRRYRCPDCCTVWRQDTTAAA
ASRTKLSRDAVFWALKSVVIDRMSIARVAENLGTAWHTVNDAVLEAGSELLINDPARFEGVRVLGVDEHVWSHTRGGNKYVTVIIDLTPVRDGTGASRLL
DMVPGRSKKVLKTWLDQQEQGFRDRIETVAMDGFTGFKTAAAEEIPQAVAVMDPFHVVALAGDALDRCRQRIQQTTCGHRGRSGDPLYGIRRVLRTGADL
LTDRQCGRLSSVFAADEHAAVEATWGIYQRIVQAYRNPDRVAAKQQLTAVIQDLAGNVPASLTEVITLGRTLKRRAGDVLAYFDRPGTSNGPTEAINGRL
EHLRGTALGFRNLAHYILRSLLDTGGFRPLLHRQMR

 

Blast result :
Comments
ISAar39 is 78% aa similar to IS1096.
References
[1] ISfinder annotation (2009).