ISAva5

  • Family IS5
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007413 ND Anabaena variabilis
Anabaena variabilis ATCC 29413
DNA section
IS Length : 1818 bp

Ends


IR Length : 18

IRL : GGATACTGTTGGCGAATTATTGAAGGGTTAAGCCCCTCAAGAGTTTGGAA
IRR : GGATACTGTTGGCGAATTGATAGAGGGCAAAACCAATCATCACAAAATAG

Insertion site


Left flankDirect repeatRight flankDR Length
CTCCCCTTCCTTGGTAGGGAAGGGGT6
ACCCCTTCCCTACAAGGGAAGGGGC5
GCCTCTCCCCGGCGCGGGGAGAGGT5
ACCCCTTCCCTACAAGGGAAGGGGA5
GCCTCTCTCCTTGTAGGAGAGAGGT5
ACCTCTCCCCTGCAAGGAGAGAGGC5
GCCTCTCTCCTTGCAGGGGAGAGGT5
GCCTCTTCCCTTGCAGGGAAGGGGT5
GCCCCTTCCCTTGTAGGGAAGGGGT5
TCCCCTTCCCTACAAGGGAAGGGGT5
CCTTCCCTTGTACAAGGGAAGG2
CCTTCCCTTGTACAAGGGAAGG2
CCTTCCCTTGTACAAGGGAAGG2
TCCCCTCGTCTACAAGGGAA0
TCTCCTACAATTGTAGGAGC0
TTCCCTTGTATCGTCGGGGA0

DNA sequence

GGATACTGTTGGCGAATTATTGAAGGGTTAAGCCCCTCAAGAGTTTGGAACAGTGGAAAAAAGAGAATAAGTATATTGAGCGTAGCATCTACAAAGATTA
TGACCCTGCACCCGCGTGATATGTCGCAGATTCCTGAAACAACAGCGCAAGTAGCCCGGAATTCATTTCCCAAAGGGAACATATATATGAAGATGCGGGA
TGAAATAGGAGTGTTATATAAGGATGAGGATTTTGTCAAACTTTACCGCGCAGATTGTGGTCAAAGTGGAATATCAGCAGGACAACTGGCATTAGTGACA
GTAATGCAATTTATCGAAGGTTTAACGGATAGACAAGCGGCGGATGCAGTGAGGGGTCATATTGATTGGAAATACGCACTATCGTTGGAATTAAATGACC
CAGGGTTTGATTATTCAGTACTTTCAGAATTTCGTCAGCGATTAATCAAAGCAGGACGAGAGCGAGAGTTACTCAACCAAATGCTAGCTCGTTTCCAAGA
ACTAGGTTGGCTCAAAAATCGCGGCCGTGTCAGAACTGATTCAACTCACGTATTAGCCGCAGTACGACAGTTAAATCGTTTGGAATTAGTGGGAGAAACT
TTACGTCATACCTTAAATGACTTGGCTTATTTTGCCCCTGATTGGCTCAAATCGAGAGTTGACGTTGATTGGTTTGAACGTTACTCCCTGAGATTTGAGC
AATACCGCTTGCCCAAATCAAAAGCCGAACGTGAGAAATTGAGGCGAAAAATTGGTGAGGATGGTCATCATTTGCTATCCGCTTTGTATGCAGACTCAAC
TTGTAATTGGCTGTGGCAGATTCCATCAGTGGAAACATTACGTATAGTTTGGGTGCAACAATACTATATTCAATTGCAACAAGTCTATTGGCGAGAACAA
GATAACTTACCACCAAATAGACTACAGATTGAATCTCCTTACGATGTTGATGCACGCAATTCCAGCAAGCGAGAAATCAACTGGACTGGTTATAATCTGC
ATCTGACAGAAATTTGTCACCCCATACTGCCAAACTTAATTATCAATGTGGAAACGTCCGTGGCCACAAGTGCGGATGTTGAGATGACACCAGTAATTCA
TTCTCGTTTAAACCAGAACAATCTTTTGCCACAAGAACATGTTGTCGATACTGGCTATGTCAATGCTCAAAACTTAGTCGATAGTCAATCCCATTTTCAT
GTTGATTTAGTAGGAAAAGTTCCCCCCGGAACTAGTTGGCAAGCAACAGCACAATCCGGCTTTGAGCAAAATTGCTTCACTATTCATTGGGATTTGATGC
GTGTTGATTGCCCAATGGGTAAACAAAGTAAGTCCTGGCGTACAACTGTCGATAGCCATGACAATCCAGTAGTCAAAATACAATTTGACAAATCCGATTG
TTCGCTTTGTTCAAGTCGCTCAAAATGCACTCGCTCCAAAAAACTACCGCGTCTTCTGACCCTCAAACCACAGGAACTACATCTTGCATTACATGATGCT
CGCATTCGCCAAAAAACTGAATCTTTTCAACAAATTTATCACCAACGTGCTGGCGTTGAAGGCTTGATTTCCCAAGCTACTGGTCGCTACCAATTACGCC
GTTGTCGCTACATTGGTCTTGCCAAAACTCTCTTGCAGCATGTCATTACTGCTGCTGCTATCAACTTCAGTCGGATGTGGGATTGGTGGCAACATGTCCC
ACGCAGTCAGACTCGCGTTTCTCACTTTGCTCGAATTGCTCCCACTGCCTCATAGTATTCCTGATTTTCTATTTTGTGATGATTGGTTTTGCCCTCTATC
AATTCGCCAACAGTATCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1656 bp551 aa1001755+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTLHPRDMSQIPETTAQVARNSFPKGNIYMKMRDEIGVLYKDEDFVKLYRADCGQSGISAGQLALVTVMQFIEGLTDRQAADAVRGHIDWKYALSLELND
PGFDYSVLSEFRQRLIKAGRERELLNQMLARFQELGWLKNRGRVRTDSTHVLAAVRQLNRLELVGETLRHTLNDLAYFAPDWLKSRVDVDWFERYSLRFE
QYRLPKSKAEREKLRRKIGEDGHHLLSALYADSTCNWLWQIPSVETLRIVWVQQYYIQLQQVYWREQDNLPPNRLQIESPYDVDARNSSKREINWTGYNL
HLTEICHPILPNLIINVETSVATSADVEMTPVIHSRLNQNNLLPQEHVVDTGYVNAQNLVDSQSHFHVDLVGKVPPGTSWQATAQSGFEQNCFTIHWDLM
RVDCPMGKQSKSWRTTVDSHDNPVVKIQFDKSDCSLCSSRSKCTRSKKLPRLLTLKPQELHLALHDARIRQKTESFQQIYHQRAGVEGLISQATGRYQLR
RCRYIGLAKTLLQHVITAAAINFSRMWDWWQHVPRSQTRVSHFARIAPTAS

 

Blast result :
Comments
ISAva5 is 65% aa similar to ISAcma45.
References
1] ISfinder annotation (2009).
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,Glavina,T., Hammon,N., Israni,S., Pitluck,S., Saunders,E.H.,Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Mavrommatis,K. and Richardson,P.(2005) Direct Submission.