ISAva5
- Family IS5
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_007413 | ND | Anabaena variabilis | Anabaena variabilis ATCC 29413 |
DNA section
IS Length : 1818 bp
Ends
IR Length : 18
IRL : GGATACTGTTGGCGAATTATTGAAGGGTTAAGCCCCTCAAGAGTTTGGAA
IRR : GGATACTGTTGGCGAATTGATAGAGGGCAAAACCAATCATCACAAAATAG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CTCCCCTTCC | TTGGTA | GGGAAGGGGT | 6 |
| ACCCCTTCCC | TACAA | GGGAAGGGGC | 5 |
| GCCTCTCCCC | GGCGC | GGGGAGAGGT | 5 |
| ACCCCTTCCC | TACAA | GGGAAGGGGA | 5 |
| GCCTCTCTCC | TTGTA | GGAGAGAGGT | 5 |
| ACCTCTCCCC | TGCAA | GGAGAGAGGC | 5 |
| GCCTCTCTCC | TTGCA | GGGGAGAGGT | 5 |
| GCCTCTTCCC | TTGCA | GGGAAGGGGT | 5 |
| GCCCCTTCCC | TTGTA | GGGAAGGGGT | 5 |
| TCCCCTTCCC | TACAA | GGGAAGGGGT | 5 |
| CCTTCCCTTG | TA | CAAGGGAAGG | 2 |
| CCTTCCCTTG | TA | CAAGGGAAGG | 2 |
| CCTTCCCTTG | TA | CAAGGGAAGG | 2 |
| TCCCCTCGTC | TACAAGGGAA | 0 | |
| TCTCCTACAA | TTGTAGGAGC | 0 | |
| TTCCCTTGTA | TCGTCGGGGA | 0 |
DNA sequence
GGATACTGTTGGCGAATTATTGAAGGGTTAAGCCCCTCAAGAGTTTGGAACAGTGGAAAAAAGAGAATAAGTATATTGAGCGTAGCATCTACAAAGATTA
TGACCCTGCACCCGCGTGATATGTCGCAGATTCCTGAAACAACAGCGCAAGTAGCCCGGAATTCATTTCCCAAAGGGAACATATATATGAAGATGCGGGA
TGAAATAGGAGTGTTATATAAGGATGAGGATTTTGTCAAACTTTACCGCGCAGATTGTGGTCAAAGTGGAATATCAGCAGGACAACTGGCATTAGTGACA
GTAATGCAATTTATCGAAGGTTTAACGGATAGACAAGCGGCGGATGCAGTGAGGGGTCATATTGATTGGAAATACGCACTATCGTTGGAATTAAATGACC
CAGGGTTTGATTATTCAGTACTTTCAGAATTTCGTCAGCGATTAATCAAAGCAGGACGAGAGCGAGAGTTACTCAACCAAATGCTAGCTCGTTTCCAAGA
ACTAGGTTGGCTCAAAAATCGCGGCCGTGTCAGAACTGATTCAACTCACGTATTAGCCGCAGTACGACAGTTAAATCGTTTGGAATTAGTGGGAGAAACT
TTACGTCATACCTTAAATGACTTGGCTTATTTTGCCCCTGATTGGCTCAAATCGAGAGTTGACGTTGATTGGTTTGAACGTTACTCCCTGAGATTTGAGC
AATACCGCTTGCCCAAATCAAAAGCCGAACGTGAGAAATTGAGGCGAAAAATTGGTGAGGATGGTCATCATTTGCTATCCGCTTTGTATGCAGACTCAAC
TTGTAATTGGCTGTGGCAGATTCCATCAGTGGAAACATTACGTATAGTTTGGGTGCAACAATACTATATTCAATTGCAACAAGTCTATTGGCGAGAACAA
GATAACTTACCACCAAATAGACTACAGATTGAATCTCCTTACGATGTTGATGCACGCAATTCCAGCAAGCGAGAAATCAACTGGACTGGTTATAATCTGC
ATCTGACAGAAATTTGTCACCCCATACTGCCAAACTTAATTATCAATGTGGAAACGTCCGTGGCCACAAGTGCGGATGTTGAGATGACACCAGTAATTCA
TTCTCGTTTAAACCAGAACAATCTTTTGCCACAAGAACATGTTGTCGATACTGGCTATGTCAATGCTCAAAACTTAGTCGATAGTCAATCCCATTTTCAT
GTTGATTTAGTAGGAAAAGTTCCCCCCGGAACTAGTTGGCAAGCAACAGCACAATCCGGCTTTGAGCAAAATTGCTTCACTATTCATTGGGATTTGATGC
GTGTTGATTGCCCAATGGGTAAACAAAGTAAGTCCTGGCGTACAACTGTCGATAGCCATGACAATCCAGTAGTCAAAATACAATTTGACAAATCCGATTG
TTCGCTTTGTTCAAGTCGCTCAAAATGCACTCGCTCCAAAAAACTACCGCGTCTTCTGACCCTCAAACCACAGGAACTACATCTTGCATTACATGATGCT
CGCATTCGCCAAAAAACTGAATCTTTTCAACAAATTTATCACCAACGTGCTGGCGTTGAAGGCTTGATTTCCCAAGCTACTGGTCGCTACCAATTACGCC
GTTGTCGCTACATTGGTCTTGCCAAAACTCTCTTGCAGCATGTCATTACTGCTGCTGCTATCAACTTCAGTCGGATGTGGGATTGGTGGCAACATGTCCC
ACGCAGTCAGACTCGCGTTTCTCACTTTGCTCGAATTGCTCCCACTGCCTCATAGTATTCCTGATTTTCTATTTTGTGATGATTGGTTTTGCCCTCTATC
AATTCGCCAACAGTATCC
TGACCCTGCACCCGCGTGATATGTCGCAGATTCCTGAAACAACAGCGCAAGTAGCCCGGAATTCATTTCCCAAAGGGAACATATATATGAAGATGCGGGA
TGAAATAGGAGTGTTATATAAGGATGAGGATTTTGTCAAACTTTACCGCGCAGATTGTGGTCAAAGTGGAATATCAGCAGGACAACTGGCATTAGTGACA
GTAATGCAATTTATCGAAGGTTTAACGGATAGACAAGCGGCGGATGCAGTGAGGGGTCATATTGATTGGAAATACGCACTATCGTTGGAATTAAATGACC
CAGGGTTTGATTATTCAGTACTTTCAGAATTTCGTCAGCGATTAATCAAAGCAGGACGAGAGCGAGAGTTACTCAACCAAATGCTAGCTCGTTTCCAAGA
ACTAGGTTGGCTCAAAAATCGCGGCCGTGTCAGAACTGATTCAACTCACGTATTAGCCGCAGTACGACAGTTAAATCGTTTGGAATTAGTGGGAGAAACT
TTACGTCATACCTTAAATGACTTGGCTTATTTTGCCCCTGATTGGCTCAAATCGAGAGTTGACGTTGATTGGTTTGAACGTTACTCCCTGAGATTTGAGC
AATACCGCTTGCCCAAATCAAAAGCCGAACGTGAGAAATTGAGGCGAAAAATTGGTGAGGATGGTCATCATTTGCTATCCGCTTTGTATGCAGACTCAAC
TTGTAATTGGCTGTGGCAGATTCCATCAGTGGAAACATTACGTATAGTTTGGGTGCAACAATACTATATTCAATTGCAACAAGTCTATTGGCGAGAACAA
GATAACTTACCACCAAATAGACTACAGATTGAATCTCCTTACGATGTTGATGCACGCAATTCCAGCAAGCGAGAAATCAACTGGACTGGTTATAATCTGC
ATCTGACAGAAATTTGTCACCCCATACTGCCAAACTTAATTATCAATGTGGAAACGTCCGTGGCCACAAGTGCGGATGTTGAGATGACACCAGTAATTCA
TTCTCGTTTAAACCAGAACAATCTTTTGCCACAAGAACATGTTGTCGATACTGGCTATGTCAATGCTCAAAACTTAGTCGATAGTCAATCCCATTTTCAT
GTTGATTTAGTAGGAAAAGTTCCCCCCGGAACTAGTTGGCAAGCAACAGCACAATCCGGCTTTGAGCAAAATTGCTTCACTATTCATTGGGATTTGATGC
GTGTTGATTGCCCAATGGGTAAACAAAGTAAGTCCTGGCGTACAACTGTCGATAGCCATGACAATCCAGTAGTCAAAATACAATTTGACAAATCCGATTG
TTCGCTTTGTTCAAGTCGCTCAAAATGCACTCGCTCCAAAAAACTACCGCGTCTTCTGACCCTCAAACCACAGGAACTACATCTTGCATTACATGATGCT
CGCATTCGCCAAAAAACTGAATCTTTTCAACAAATTTATCACCAACGTGCTGGCGTTGAAGGCTTGATTTCCCAAGCTACTGGTCGCTACCAATTACGCC
GTTGTCGCTACATTGGTCTTGCCAAAACTCTCTTGCAGCATGTCATTACTGCTGCTGCTATCAACTTCAGTCGGATGTGGGATTGGTGGCAACATGTCCC
ACGCAGTCAGACTCGCGTTTCTCACTTTGCTCGAATTGCTCCCACTGCCTCATAGTATTCCTGATTTTCTATTTTGTGATGATTGGTTTTGCCCTCTATC
AATTCGCCAACAGTATCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1656 bp | 551 aa | 100 | 1755 | + | No |
Chemistry : DDE
ORF sequence :
MTLHPRDMSQIPETTAQVARNSFPKGNIYMKMRDEIGVLYKDEDFVKLYRADCGQSGISAGQLALVTVMQFIEGLTDRQAADAVRGHIDWKYALSLELND
PGFDYSVLSEFRQRLIKAGRERELLNQMLARFQELGWLKNRGRVRTDSTHVLAAVRQLNRLELVGETLRHTLNDLAYFAPDWLKSRVDVDWFERYSLRFE
QYRLPKSKAEREKLRRKIGEDGHHLLSALYADSTCNWLWQIPSVETLRIVWVQQYYIQLQQVYWREQDNLPPNRLQIESPYDVDARNSSKREINWTGYNL
HLTEICHPILPNLIINVETSVATSADVEMTPVIHSRLNQNNLLPQEHVVDTGYVNAQNLVDSQSHFHVDLVGKVPPGTSWQATAQSGFEQNCFTIHWDLM
RVDCPMGKQSKSWRTTVDSHDNPVVKIQFDKSDCSLCSSRSKCTRSKKLPRLLTLKPQELHLALHDARIRQKTESFQQIYHQRAGVEGLISQATGRYQLR
RCRYIGLAKTLLQHVITAAAINFSRMWDWWQHVPRSQTRVSHFARIAPTAS
PGFDYSVLSEFRQRLIKAGRERELLNQMLARFQELGWLKNRGRVRTDSTHVLAAVRQLNRLELVGETLRHTLNDLAYFAPDWLKSRVDVDWFERYSLRFE
QYRLPKSKAEREKLRRKIGEDGHHLLSALYADSTCNWLWQIPSVETLRIVWVQQYYIQLQQVYWREQDNLPPNRLQIESPYDVDARNSSKREINWTGYNL
HLTEICHPILPNLIINVETSVATSADVEMTPVIHSRLNQNNLLPQEHVVDTGYVNAQNLVDSQSHFHVDLVGKVPPGTSWQATAQSGFEQNCFTIHWDLM
RVDCPMGKQSKSWRTTVDSHDNPVVKIQFDKSDCSLCSSRSKCTRSKKLPRLLTLKPQELHLALHDARIRQKTESFQQIYHQRAGVEGLISQATGRYQLR
RCRYIGLAKTLLQHVITAAAINFSRMWDWWQHVPRSQTRVSHFARIAPTAS
Blast result :
Comments
ISAva5 is 65% aa similar to ISAcma45.
References
1] ISfinder annotation (2009).
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,Glavina,T., Hammon,N., Israni,S., Pitluck,S., Saunders,E.H.,Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Mavrommatis,K. and Richardson,P.(2005) Direct Submission.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,Glavina,T., Hammon,N., Israni,S., Pitluck,S., Saunders,E.H.,Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Mavrommatis,K. and Richardson,P.(2005) Direct Submission.