ISAva4
- Family IS1634
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_007413 | ND | Anabaena variabilis | Anabaena variabilis ATCC 29413 |
DNA section
IS Length : 1691 bp
Ends
IR Length : 16
IRL : CCCACATTCCGCAGGTAAGAGAGGAGATAAATGGTATTTTTGATGAATGA
IRR : CCCACATTCCGCAGGTGCATCAGGTAAGAAGATAATATTTTCGGCAAGGC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TTAACGAAAT | ACTCCAA | GCGATCGCCC | 7 |
DNA sequence
CCCACATTCCGCAGGTAAGAGAGGAGATAAATGGTATTTTTGATGAATGACACCATCAGTATCAGAAATAAGAGTACAAGATATTGACCACTGCGGCATA
GTGGCAGGGATAATAGACCAAATGTGTTTGGTAGAACAAATCAACCAAATACTAGGAACACACCAGCAAGAAATAGTCAGTCCAGGTCAAGCAATTAAAG
CGATGATCCTCAACGGATTGGGGCTGTTAAGTGCGCCACTATACTTATTTGAGAAGTTTTTTGTTGGCAAAGCCACAGAACATTTACTAGGGGAAGGTAT
AAAAGCAGAACATTTAAATGATGACCGATTAGGCAGAGTCTTGGACAAACTGTATGAAGCCGGGTTAACACAAGTATTTGTGACAGTAGCATTGGCAGCA
GCAGAGAAGTTTGGAGTGAAACACGAAAGTTTACACCTAGACTCAAGCTCGTTTCATGTACATGGAGAATATGCAAACAACTCAACAGCAAATGAAGCTT
CCCCTGGACAGATAAAAATTATCAAAGGATACTCAAGAGATCACCGACCAGACCTCAAACAGTTTATTGTAGATTTGATGTGCAGTGGGGATGGGGATAT
TCCTCTGTACCTGCGAGTTGCAGATGGTAATGAAGCCGATTCGGCGATGTTTGCTCAAATCTTGAAAGAATTTCATCAACAATGGGAAATAGATGCGCTA
TTTGTGGCGGATGCAGCGCTGTATAGCCAAGACAATCTCAAACAAATGGATTCTTTGCGATGGATATCACGAGTTCCCGCAACACTGACGACAGCCCAAA
TGCTAATGGAGAATATAAGTCAGGAAGCTTTTGTTGATAGTGCAATGACAGGCTATCGGATAGCAGAGTGTGGCTGCGATTACGCTGGAGTCAAACAGCG
TTGGCTGGTGGTGGAAAGTGAAGCTCGCACGGAGTCTGATTTAAAGCAACTCGAAAAACGTCTCATCAAGCAACTAGAGCAAGCGCAATCTCAACTACGG
CAGTTATCACAACAAGAATTTGCTTGTGCCGCAGATGCGCTACAAGCAGCAAAGTGTTTTGAGACTCAGCAACGCTTTCATCAACTTGCCCATTTGGAAG
TTATCGAACACAAACGCCACGCCAAATCCGGCAGACCGCGCAAAGATGCTCAACCACGACAGTCTCATTATCAAATTCGCGCTACTGTTGTCGCCAACGA
GGTAGCCATTGCTACTGAAAAACAACGTGCTGGACGATTTATTCTGGCTACCAATGTCCTGGATACTTACCAATTGAGCAATGATGACTTACTCCAGGAA
TACAAAGCCCAGCAATCGACTGAGCGCGGTTTTCGTTTTCTCAAAGACCCTTTATTTTTTACCAGTAGCGTTTTCCTTAACTCTCCACAACGAGTTGCTG
CTTTAGCAATGGTCATGGGTCTGTGTTTGTTAGTTTACTCCTTGGGACAACGGACTTTACGCCAAGCTCTTGCTCAAGCAAAACAGACTATCAATAATCA
GTTGGGTAAACCTACTGCTTCTCCTACTTTGCGATGGGTATTTCAATGTTTCATGTCGATTCATCTAGTTACTCTTTCCGGCTTTGAGTACATTGCTAAT
CTTACTGATGAGCGTCGATGGATTCTTCAATTTTTTGGTGCGCCTTGCCGAAAATATTATCTTCTTACCTGATGCACCTGCGGAATGTGGG
GTGGCAGGGATAATAGACCAAATGTGTTTGGTAGAACAAATCAACCAAATACTAGGAACACACCAGCAAGAAATAGTCAGTCCAGGTCAAGCAATTAAAG
CGATGATCCTCAACGGATTGGGGCTGTTAAGTGCGCCACTATACTTATTTGAGAAGTTTTTTGTTGGCAAAGCCACAGAACATTTACTAGGGGAAGGTAT
AAAAGCAGAACATTTAAATGATGACCGATTAGGCAGAGTCTTGGACAAACTGTATGAAGCCGGGTTAACACAAGTATTTGTGACAGTAGCATTGGCAGCA
GCAGAGAAGTTTGGAGTGAAACACGAAAGTTTACACCTAGACTCAAGCTCGTTTCATGTACATGGAGAATATGCAAACAACTCAACAGCAAATGAAGCTT
CCCCTGGACAGATAAAAATTATCAAAGGATACTCAAGAGATCACCGACCAGACCTCAAACAGTTTATTGTAGATTTGATGTGCAGTGGGGATGGGGATAT
TCCTCTGTACCTGCGAGTTGCAGATGGTAATGAAGCCGATTCGGCGATGTTTGCTCAAATCTTGAAAGAATTTCATCAACAATGGGAAATAGATGCGCTA
TTTGTGGCGGATGCAGCGCTGTATAGCCAAGACAATCTCAAACAAATGGATTCTTTGCGATGGATATCACGAGTTCCCGCAACACTGACGACAGCCCAAA
TGCTAATGGAGAATATAAGTCAGGAAGCTTTTGTTGATAGTGCAATGACAGGCTATCGGATAGCAGAGTGTGGCTGCGATTACGCTGGAGTCAAACAGCG
TTGGCTGGTGGTGGAAAGTGAAGCTCGCACGGAGTCTGATTTAAAGCAACTCGAAAAACGTCTCATCAAGCAACTAGAGCAAGCGCAATCTCAACTACGG
CAGTTATCACAACAAGAATTTGCTTGTGCCGCAGATGCGCTACAAGCAGCAAAGTGTTTTGAGACTCAGCAACGCTTTCATCAACTTGCCCATTTGGAAG
TTATCGAACACAAACGCCACGCCAAATCCGGCAGACCGCGCAAAGATGCTCAACCACGACAGTCTCATTATCAAATTCGCGCTACTGTTGTCGCCAACGA
GGTAGCCATTGCTACTGAAAAACAACGTGCTGGACGATTTATTCTGGCTACCAATGTCCTGGATACTTACCAATTGAGCAATGATGACTTACTCCAGGAA
TACAAAGCCCAGCAATCGACTGAGCGCGGTTTTCGTTTTCTCAAAGACCCTTTATTTTTTACCAGTAGCGTTTTCCTTAACTCTCCACAACGAGTTGCTG
CTTTAGCAATGGTCATGGGTCTGTGTTTGTTAGTTTACTCCTTGGGACAACGGACTTTACGCCAAGCTCTTGCTCAAGCAAAACAGACTATCAATAATCA
GTTGGGTAAACCTACTGCTTCTCCTACTTTGCGATGGGTATTTCAATGTTTCATGTCGATTCATCTAGTTACTCTTTCCGGCTTTGAGTACATTGCTAAT
CTTACTGATGAGCGTCGATGGATTCTTCAATTTTTTGGTGCGCCTTGCCGAAAATATTATCTTCTTACCTGATGCACCTGCGGAATGTGGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1626 bp | 541 aa | 47 | 1672 | + | No |
Chemistry : DDE
ORF sequence :
MTPSVSEIRVQDIDHCGIVAGIIDQMCLVEQINQILGTHQQEIVSPGQAIKAMILNGLGLLSAPLYLFEKFFVGKATEHLLGEGIKAEHLNDDRLGRVLD
KLYEAGLTQVFVTVALAAAEKFGVKHESLHLDSSSFHVHGEYANNSTANEASPGQIKIIKGYSRDHRPDLKQFIVDLMCSGDGDIPLYLRVADGNEADSA
MFAQILKEFHQQWEIDALFVADAALYSQDNLKQMDSLRWISRVPATLTTAQMLMENISQEAFVDSAMTGYRIAECGCDYAGVKQRWLVVESEARTESDLK
QLEKRLIKQLEQAQSQLRQLSQQEFACAADALQAAKCFETQQRFHQLAHLEVIEHKRHAKSGRPRKDAQPRQSHYQIRATVVANEVAIATEKQRAGRFIL
ATNVLDTYQLSNDDLLQEYKAQQSTERGFRFLKDPLFFTSSVFLNSPQRVAALAMVMGLCLLVYSLGQRTLRQALAQAKQTINNQLGKPTASPTLRWVFQ
CFMSIHLVTLSGFEYIANLTDERRWILQFFGAPCRKYYLLT
KLYEAGLTQVFVTVALAAAEKFGVKHESLHLDSSSFHVHGEYANNSTANEASPGQIKIIKGYSRDHRPDLKQFIVDLMCSGDGDIPLYLRVADGNEADSA
MFAQILKEFHQQWEIDALFVADAALYSQDNLKQMDSLRWISRVPATLTTAQMLMENISQEAFVDSAMTGYRIAECGCDYAGVKQRWLVVESEARTESDLK
QLEKRLIKQLEQAQSQLRQLSQQEFACAADALQAAKCFETQQRFHQLAHLEVIEHKRHAKSGRPRKDAQPRQSHYQIRATVVANEVAIATEKQRAGRFIL
ATNVLDTYQLSNDDLLQEYKAQQSTERGFRFLKDPLFFTSSVFLNSPQRVAALAMVMGLCLLVYSLGQRTLRQALAQAKQTINNQLGKPTASPTLRWVFQ
CFMSIHLVTLSGFEYIANLTDERRWILQFFGAPCRKYYLLT
Blast result :
Comments
ISAva4 is 65% aa similar to ISCwa1.
References
1] ISfinder annotation (2009).
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,Glavina,T., Hammon,N., Israni,S., Pitluck,S., Saunders,E.H.,Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Mavrommatis,K. and Richardson,P.(2005) Direct Submission.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,Glavina,T., Hammon,N., Israni,S., Pitluck,S., Saunders,E.H.,Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Mavrommatis,K. and Richardson,P.(2005) Direct Submission.