ISAar35

  • Family IS481
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Arthrobacter arilaitensis
Arthrobacter arilaitensis RE117
DNA section
IS Length : 1072 bp

Ends


IR Length : 23/26

IRL : TGTATTAACCACGGACGTTAGGAACATGCGGCGTGGCTGAGTGACAAAAA
IRR : TGTATTAGCCACGGAGGTTAGGAACACGGTCCGCTGGCGCCAGACCCTTC

Insertion site


Left flankDirect repeatRight flankDR Length
ATCCCGTGG GCTAGTCCTAGG ACAGCTTGC0

DNA sequence

TGTATTAACCACGGACGTTAGGAACATGCGGCGTGGCTGAGTGACAAAAAGAAGACCTCCGAGTGAAGTGGTGTTTGCGACAACATCTACGACATCCCGG
AGGTCTTCATGTCCCATTCTAATGCCATCCTTGCGCCCAAAGGCCGGTTGCTGCTGGCACGGTGCATCGTGGAAGACCGCTGGCCACTGCGCCGCGCCGC
CGAGCGGTTCCAAGTCTCCGTGTCCACCGCCTCCCGCTGGGCTTCCCGCTACCGGGTGCAAGGCGAGGCAGGGATGCAGGACCGCTCCAGCCGGCCACAC
CATTCACCGCGCCGCACCAGCGTGCGCACCGAACGGCGGATCATCGCAGTGCGCGTAAACCGCAGATGGGGACCGGCCCAGATCGCTTTCCTGCTGGGAC
TGCACCCCTCCACCGTGCACAAGGTCCTCTCCCGGGTAGGGCTCTCCAGGCTGGCATGGCAGGACCGTGCCACCGGACAGGTCATCCGCCGTTACGAGCA
CGAGGCACCCGGGGACCTGATCCACGTGGACATCAAGAAACTCGGACGAATCCCTGACGGTGGCGGGCACCGGGTCATGGACCGGGCCGCGGGGCGGCGC
AACAAGACCAAGACACCCCAGGACCGCCGTCCGGGCTACGCGTACCTGCACAACGCCGTGGATGACTACTCGCCGCTGGCCTACACCGAAATCCTCTCAG
ATGATCAGAAGGAAACCGCCGCAGGATTCTGGGAACGGGCCAACGCCTACTTCCAAGGTGCAGGGATCACCGTGAAACGCGTACTCACAGATAACGGATC
CTGCTACCGCTCGCATACCTTGGCCGACGCGCTGGGTCCGGAGGTCAAGCATAAGCGCACCCGGCCCTACCGGCCGCAAACCAATGGCAAGGTCGAGCGG
TTCAATCGCACCATGATCGAGGAGTGGGCTTATGCCCGGCCTTACCGTTCTGAGGCCGAGGGGGTGGCTGCATTCCCGCAGTGGTTAGACTATTACAACC
ACCGTCGTGGACATGCTTCGCTGAAGGGTCTGGCGCCAGCGGACCGTGTTCCTAACCTCCGTGGCTAATACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
960 bp319 aa1091068+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSHSNAILAPKGRLLLARCIVEDRWPLRRAAERFQVSVSTASRWASRYRVQGEAGMQDRSSRPHHSPRRTSVRTERRIIAVRVNRRWGPAQIAFLLGLHP
STVHKVLSRVGLSRLAWQDRATGQVIRRYEHEAPGDLIHVDIKKLGRIPDGGGHRVMDRAAGRRNKTKTPQDRRPGYAYLHNAVDDYSPLAYTEILSDDQ
KETAAGFWERANAYFQGAGITVKRVLTDNGSCYRSHTLADALGPEVKHKRTRPYRPQTNGKVERFNRTMIEEWAYARPYRSEAEGVAAFPQWLDYYNHRR
GHASLKGLAPADRVPNLRG

 

Blast result :
Comments
ISAar35 is 79% aa similar to ISAni1.
References
1] ISfinder annotation (2009)