ISAar34

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Arthrobacter arilaitensis
Arthrobacter arilaitensis RE117
DNA section
IS Length : 1438 bp

Ends


IR Length : 20/23

IRL : GGCTCTACTGACATATCCGTGGGCGTGAGCCGCGAGCCTTAACGTCCACA
IRR : GGCTCTACTGACTCTTCCGTGGGTCATCCCCGTCCCGGGAGTACCGGTTT

Insertion site


Left flankDirect repeatRight flankDR Length
ATGCCTAACCCTAATTTTGTCGCTTTCG8

DNA sequence

GGCTCTACTGACATATCCGTGGGCGTGAGCCGCGAGCCTTAACGTCCACACGCCGCTTCCTGCCTAGGATTTTTGACTGACTAAGGTACAAAAATCTAGG
GACTGAAAACGGCGTGCAGAAAACAAGCATATGGGCCGCCCTGCTGGGTGTCGAAAAAACGACCGTCCACCACGTGGATACCTGCCCGGAAACCGGGGTC
CTGCTGGCCCGGGTGACACCGCACAAGTCCTTGCGGAACAGATGCGGAATCTGCTCCAGGCGGTGCTCCCGGTACGACCGCGGTGAAGGCCCCCGACGGT
GGCGCACCCTGGATCTGGGAACCACCGAAACCTATCTCGTGGCCCACGCGCCTCGTGTGCGCTGCCCGGAGCACGGAGTCATCGTCGCCGCCGTTCCCTG
GGCCCGCCACCAGGCCGGACACACCCGGGACTTTGACCAGCAGGTCTCCTGGCTGGCCACCCAATGCTCCAAGAGCGCGGTCACCGTGCTGATGCGCATT
GCCTGGCGCACCGTGGGCTCCATCATCAACCGGGTCTGGAAGGACACCGCCAAGACCTTCGACCCGTTCGCGGACCTCAAGCGGATCGGCATCGACGAGA
TCTCCTACAAACGCGGACACAAGTACATCACCGTGGTCGTGGACCACGATTCGGGCCGCCTGATTTGGGCCTCGCCGGGCCGTGACAAGGCCACGCTGCG
GAAGTTCTTTGACGCACTCGGGGAGGAACGATCCGCCCAGATCACGCATGTTTCCGCCGATGCCGCGAACTGGATCGCCACCGTCGTGGCCGAACGCTGC
CCCCAGGCCGTCCGTGTGGCCGACCCGTTCCATGTGGTCCAATGGGCTACCGGGGCCCTGGATGAGGAACGCCGCGCATCCTGGAATCGGGCCCGGAAAG
CGGCCGAAGAAAATGAGCCGGCCAGGGGCAGGGGACGGCCGCCCAAGGATGCCCCGGAACGGCCCGATAGCCAGAAGGCGACGAAGCTGAAAAACTCCCG
CTACGCGCTCTGGAAGAACCCCGAGGACCTCACCGTGAAGCAAAAGGTGAAGCTCGATTGGATCGTTCAGACCGACCCGAGGCTGGGCCGCGCGTACTAC
CTCAAAGAGGGGCTGCGGACCATCTTCAGGCTGCCACATGCGGACGCGGTGGTGGCCCTGGACAAGTGGGTTTCTTGGGCCAGGCGCTGCCGGATTCCCG
CGTTCGTGAAGCTGCAAAAGAGCATCGTCAAGCACCGCGAAGCCATTCTGGCATCGATCGAGCACGGATTGAGCAATGGGCGGATCGAATCCATGAATAC
CAAAATCAGGCTCATCACCCGGGTGGCCTTCGGATTCAAAGCACCCGAAGCCCTCATCGGCCTGGCGATGCTCAGCCTCGGAGGCCGGAAACCGGTACTC
CCGGGACGGGGATGACCCACGGAAGAGTCAGTAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1302 bp433 aa1141415+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

VQKTSIWAALLGVEKTTVHHVDTCPETGVLLARVTPHKSLRNRCGICSRRCSRYDRGEGPRRWRTLDLGTTETYLVAHAPRVRCPEHGVIVAAVPWARHQ
AGHTRDFDQQVSWLATQCSKSAVTVLMRIAWRTVGSIINRVWKDTAKTFDPFADLKRIGIDEISYKRGHKYITVVVDHDSGRLIWASPGRDKATLRKFFD
ALGEERSAQITHVSADAANWIATVVAERCPQAVRVADPFHVVQWATGALDEERRASWNRARKAAEENEPARGRGRPPKDAPERPDSQKATKLKNSRYALW
KNPEDLTVKQKVKLDWIVQTDPRLGRAYYLKEGLRTIFRLPHADAVVALDKWVSWARRCRIPAFVKLQKSIVKHREAILASIEHGLSNGRIESMNTKIRL
ITRVAFGFKAPEALIGLAMLSLGGRKPVLPGRG

 

Blast result :
Comments
ISAar34 is 77% aas imilar to ISTesp2.
References
1] ISfinder annotation (2009).