ISAar30

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Arthrobacter arilaitensis
Arthrobacter arilaitensis RE117
DNA section
IS Length : 1435 bp

Ends


IR Length : 26/31

IRL : GGCTCTTCACAGATGAGGGTGTAGCTGTGGTGCGACCTGGGGCGGCGCGT
IRR : GGCTCTTCACAATTCGGGGTGTAGGTGTGGTCTGAATCCGCCGGCTTCGA

Insertion site


Left flankDirect repeatRight flankDR Length
GCCGGGTTTCGGAAAAATTCTG2

DNA sequence

GGCTCTTCACAGATGAGGGTGTAGCTGTGGTGCGACCTGGGGCGGCGCGTCGGTGTCGGGGTGAGGGCCGAGGTCTTCCGATGATGGGAGTTCTCACACA
ACCCGTCCGGAAGACCTCGGCGTGCCTGACGCTACCTTCACGCGCCCTGACCTGACTACCTTCACCCGCCTCGACGGCCTCGGTCTGGAGGTCACCGGCC
AGCTGCTCGAGCCTGACCGGTCCGTGCTGGCGTGCCGGGTCGTGGAGCCGGACGACTGGTGCAGGCGGTGCGGCTGCCAGGGCGTGCCCCGTGGCACGGT
GAGCAGGGAGTTGGCGCACGAGCCGTTCGGGTGGCGCCCTACCACGCTGGTGCTCACCGTGCGCCGCTACCGCTGCAAGGAGTGCTCGCACGTGTGGCGT
CAGGACACCACCGCTGCGGCGCCGCCGCGGGCCAAGATCTCCCGCGCCGGCCTGCGGTGGGGTCTGGTCGGGATCGTCGTCGGCCACCTGTCGATGGCCC
GAGTTGCCGAAGGACTGGGCGTGGCGTGGAACACCGCCAACGACGCGGTCCTGGCTGAGGGCCGGCGTCTGCTCATCGAGGACCCGACCCGCCCGGACGG
TGTCAAGGTCGTCGGGGTCGATGAGCACGTGTGGCGGCACACCCGGCGCGGTGACAAGTACGTCACCGTGATCATCGACCTCACCCCGGTCCGGGACGGC
ACCGGGCCCTCACGCCTGCTGGACGTGGTCGAAGGTCGGTCGAAGAAGGCGTTCAAGGACTGGCTGGCCGAGCGGGATCAGGCTTGGCGCGATGGGATCG
AGGTCGTGGCCATGGATGGGTTCGCGGGCTTCAAGACCGCCACCACCGAGGAGCTGCCGGACGCCGTCACGGTTATGGATCCCTTCCACGTCATCCGGTT
GGCCGGGGACGCTCTCGATGAGTGCCGCCGCCGAGTCCAGCAGGAACTGCACGGACACCGCGGACGCAAGGGCGACCCGCTCTACACCGCGCGGCGGACC
CTGCACACCGGGGCTGACCTGCTCACCGACCGCCAGCGCGAGCGCCTTGACAAGCTCTTCGCTGGGGACCGGCACGTGCAAGTCGAGTGCACCTGGGGGA
TCTACCAGCGCATGATCTCCGCCTACCGTCACCCCGACCGGGCAGCCGGCCGCGTCGAGATGAGCTCCGTGATCGACGCCCTCGCCGACAGTGTGCCTGA
GGCGTTGGTAGAACTGCGCAAGCTCGGCCGCACCCTGACCAGACGCGCCTGCGACGTCCTGGCCTACTTCGACCGGCCGCGCAAGGGCAACGGACCTACC
GAAGCCGTGAACGGTCGCCTCGAGCACCTGCGTGGCCTGGCCCTCGGCTTCCGCAACCTCACCAACTAGATCGCCAGCGCACTCCTCGAAGCCGGCGGAT
TCAGACCACACCTACACCCCGAATTGTGAAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1248 bp415 aa1221369+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MPDATFTRPDLTTFTRLDGLGLEVTGQLLEPDRSVLACRVVEPDDWCRRCGCQGVPRGTVSRELAHEPFGWRPTTLVLTVRRYRCKECSHVWRQDTTAAA
PPRAKISRAGLRWGLVGIVVGHLSMARVAEGLGVAWNTANDAVLAEGRRLLIEDPTRPDGVKVVGVDEHVWRHTRRGDKYVTVIIDLTPVRDGTGPSRLL
DVVEGRSKKAFKDWLAERDQAWRDGIEVVAMDGFAGFKTATTEELPDAVTVMDPFHVIRLAGDALDECRRRVQQELHGHRGRKGDPLYTARRTLHTGADL
LTDRQRERLDKLFAGDRHVQVECTWGIYQRMISAYRHPDRAAGRVEMSSVIDALADSVPEALVELRKLGRTLTRRACDVLAYFDRPRKGNGPTEAVNGRL
EHLRGLALGFRNLTN

 

Blast result :
Comments
ISAar30 is 82% aa similar to IS1096.
References
1] ISfinder annotation (2009)