ISNml1
- Family IS1380
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_013235 | ND | Nakamurella multipartita | Nakamurella multipartita DSM 44233 |
DNA section
IS Length : 1636 bp
Ends
IR Length : 16/22
IRL : CCTGGATTCACCGGTGGGGTGGAGCCGGCGCGGCGCGTTTAACGCAAGAG
IRR : CCTGAATCCACCGATTGCGTTGGTGGGTCGGTCGGCTCGGGTGGATCTTG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TCCTGTCGGC | CTGAG | GCCCGGCGAT | 5 |
DNA sequence
CCTGGATTCACCGGTGGGGTGGAGCCGGCGCGGCGCGTTTAACGCAAGAGGGTGCTCCTGACCTGCACGATCACGGTTACCACACCAAAGATCACGCAAG
CCCAGGGAGCACCCTCTTGGTGACGAAGTCTTGCACACTGGACCGCTTGTCCGTACGCGCTGACGAGGACAGTGTCGTGTCCGATGCCGGGTTGCTGGTC
GCGGCAACTTTGGCCCAACGGCTGGATCTGGCCGGTTTGTTGCGTGAGCACGTCACGGTGCCCGGGAGCGTGGGCGCCCACCCGGACCGCAAGTGCCTGA
CCGTCGTCCATTCGCTGCTGGCCGGCGGTGACTGCATCGATGACGTGAACGCTTTGCGGGCGGGCTCGACCAGCGCAGTGCTGGGACACCGGGTCGCGGC
GCCGTCCACGGTCGGCACGTTCCTCCGCGCTTTCGGCTTCGGACACGCCCGCCAACTGGACGTGGTGACCCGCCGCCTGCTGACCCGAGCTGTGACCGCC
GGCGCACATCCACAGTTCGGTCGGTCGGTCACCGTCGATATCGACTCGACCCTGTGTGAGACGTTCGGGCTGGCCAAGGACGGTGCCCGGGAAGTCATGC
GGACCGGGCGCCGCGGCTACCACCCGCTGCTGGCAGTGATCTCCGGGACCGGCGATATCGCGCATGCCCGGCTCCGGCGGGGCCGTTCCAACGACGCCAC
CGCGGCACCGCTGTTCATCAACGAAACGATCTCCCGGCTGCGTCAGGCCGGCGCCACCGGGCAGATCGTGCTGCGCGCCGACTCCGGCTTCTATCTGCAC
GACGTCGTCGCGGCCTGCCGGGCCGCCGATGTGCGGTTCTCGATCGGCGCCCGGATGATCGGGCACCTACGAGGACAGATCGAGGCGATCCCGGACGAGC
AATGGCAGCCGATCGAGTACTTCCTGCCCGGCGCCGGGGTCGCCGAGATCCCGTACACCCCGTTCGCCCAGGACACCCACGGCCGCGACCGGACCGACAC
CGTCCCGCTACGACTGATGGTGCGGCGCACCCCACCCACCCAGGCCCAGGTCCGCAACCGCGGCCAGGACACCGACCAGGCAGCGTTGTTCCCGGTCTAC
GACTACCACCCGATCATCACCGACCGGGACGGCGACCTGCGCGACCTGGAGGCCGACCATCGCCGGCACGCCGAGGTCGAGCTCACCATCCGGGACCTCA
AACACGGCATGGGTCTGGCGCACTTGCCGACCAAAAGCTTCGGCGGGAACGCCGCCTGGCTGATCTTGAACACCATCGCCCACAACCTCACCCGCTGGAT
CACCCGCCTCGGCTTTGACCAAGGCCACCGGATGACCAAGAACATCCGCCGCCGCGTGTTCAACCTCGCCGGCCGGCTGGTCCGCACCGGCCGACGCACC
ACCCTGCGGCTACCCAGTCGCTGGCCCTGGGCCCACGCCATCATCACCGCCATCAAACGGCTCCGCGACCTACCCGCGGCGACCGGATAACCCAGCCAGG
ACCACGACCCCACACTCAGGAACCAGGAGAAGCCGGACCGACCGGCAACTCAACCCTGCCCAACCTCGAAATCGGACACCCCGCCCCAAGATCCACCCGA
GCCGACCGACCCACCAACGCAATCGGTGGATTCAGG
CCCAGGGAGCACCCTCTTGGTGACGAAGTCTTGCACACTGGACCGCTTGTCCGTACGCGCTGACGAGGACAGTGTCGTGTCCGATGCCGGGTTGCTGGTC
GCGGCAACTTTGGCCCAACGGCTGGATCTGGCCGGTTTGTTGCGTGAGCACGTCACGGTGCCCGGGAGCGTGGGCGCCCACCCGGACCGCAAGTGCCTGA
CCGTCGTCCATTCGCTGCTGGCCGGCGGTGACTGCATCGATGACGTGAACGCTTTGCGGGCGGGCTCGACCAGCGCAGTGCTGGGACACCGGGTCGCGGC
GCCGTCCACGGTCGGCACGTTCCTCCGCGCTTTCGGCTTCGGACACGCCCGCCAACTGGACGTGGTGACCCGCCGCCTGCTGACCCGAGCTGTGACCGCC
GGCGCACATCCACAGTTCGGTCGGTCGGTCACCGTCGATATCGACTCGACCCTGTGTGAGACGTTCGGGCTGGCCAAGGACGGTGCCCGGGAAGTCATGC
GGACCGGGCGCCGCGGCTACCACCCGCTGCTGGCAGTGATCTCCGGGACCGGCGATATCGCGCATGCCCGGCTCCGGCGGGGCCGTTCCAACGACGCCAC
CGCGGCACCGCTGTTCATCAACGAAACGATCTCCCGGCTGCGTCAGGCCGGCGCCACCGGGCAGATCGTGCTGCGCGCCGACTCCGGCTTCTATCTGCAC
GACGTCGTCGCGGCCTGCCGGGCCGCCGATGTGCGGTTCTCGATCGGCGCCCGGATGATCGGGCACCTACGAGGACAGATCGAGGCGATCCCGGACGAGC
AATGGCAGCCGATCGAGTACTTCCTGCCCGGCGCCGGGGTCGCCGAGATCCCGTACACCCCGTTCGCCCAGGACACCCACGGCCGCGACCGGACCGACAC
CGTCCCGCTACGACTGATGGTGCGGCGCACCCCACCCACCCAGGCCCAGGTCCGCAACCGCGGCCAGGACACCGACCAGGCAGCGTTGTTCCCGGTCTAC
GACTACCACCCGATCATCACCGACCGGGACGGCGACCTGCGCGACCTGGAGGCCGACCATCGCCGGCACGCCGAGGTCGAGCTCACCATCCGGGACCTCA
AACACGGCATGGGTCTGGCGCACTTGCCGACCAAAAGCTTCGGCGGGAACGCCGCCTGGCTGATCTTGAACACCATCGCCCACAACCTCACCCGCTGGAT
CACCCGCCTCGGCTTTGACCAAGGCCACCGGATGACCAAGAACATCCGCCGCCGCGTGTTCAACCTCGCCGGCCGGCTGGTCCGCACCGGCCGACGCACC
ACCCTGCGGCTACCCAGTCGCTGGCCCTGGGCCCACGCCATCATCACCGCCATCAAACGGCTCCGCGACCTACCCGCGGCGACCGGATAACCCAGCCAGG
ACCACGACCCCACACTCAGGAACCAGGAGAAGCCGGACCGACCGGCAACTCAACCCTGCCCAACCTCGAAATCGGACACCCCGCCCCAAGATCCACCCGA
GCCGACCGACCCACCAACGCAATCGGTGGATTCAGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1314 bp | 437 aa | 177 | 1490 | + | No |
Chemistry : DDE
ORF sequence :
MSDAGLLVAATLAQRLDLAGLLREHVTVPGSVGAHPDRKCLTVVHSLLAGGDCIDDVNALRAGSTSAVLGHRVAAPSTVGTFLRAFGFGHARQLDVVTRR
LLTRAVTAGAHPQFGRSVTVDIDSTLCETFGLAKDGAREVMRTGRRGYHPLLAVISGTGDIAHARLRRGRSNDATAAPLFINETISRLRQAGATGQIVLR
ADSGFYLHDVVAACRAADVRFSIGARMIGHLRGQIEAIPDEQWQPIEYFLPGAGVAEIPYTPFAQDTHGRDRTDTVPLRLMVRRTPPTQAQVRNRGQDTD
QAALFPVYDYHPIITDRDGDLRDLEADHRRHAEVELTIRDLKHGMGLAHLPTKSFGGNAAWLILNTIAHNLTRWITRLGFDQGHRMTKNIRRRVFNLAGR
LVRTGRRTTLRLPSRWPWAHAIITAIKRLRDLPAATG
LLTRAVTAGAHPQFGRSVTVDIDSTLCETFGLAKDGAREVMRTGRRGYHPLLAVISGTGDIAHARLRRGRSNDATAAPLFINETISRLRQAGATGQIVLR
ADSGFYLHDVVAACRAADVRFSIGARMIGHLRGQIEAIPDEQWQPIEYFLPGAGVAEIPYTPFAQDTHGRDRTDTVPLRLMVRRTPPTQAQVRNRGQDTD
QAALFPVYDYHPIITDRDGDLRDLEADHRRHAEVELTIRDLKHGMGLAHLPTKSFGGNAAWLILNTIAHNLTRWITRLGFDQGHRMTKNIRRRVFNLAGR
LVRTGRRTTLRLPSRWPWAHAIITAIKRLRDLPAATG
Blast result :
Comments
ISNml1 is 50% aa similar to ISGbr1.
References
1] ISfinder annotation (2009)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A. (2009) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A. (2009) Direct submission GenBank.