ISAar29

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Arthrobacter arilaitensis
Arthrobacter arilaitensis RE117
DNA section
IS Length : 1385 bp

Ends


Left end : CACTGTGAGACTTGGTGCAGCTGGTCTGGGACTGGCTGGCAGGATAGGGACTGGCCGTCCCGCCTCGTGATTGTGACTCACCTGACACGTGACCCATTGG
Right end : ATCCGACGATGCATCAAACGCTATCTCGCCCGGCGCGTCTACCGCATTTTCAACTCACAAGCGGAGGCTTTGATCGCCGGTTGACAGACATAGAAGGGTC

Insertion site


Left flankDirect repeatRight flankDR Length
TCCACCCTGAGTAGACCGCG0
GATTGAATCGCTGGGATCGC0

DNA sequence

CACTGTGAGACTTGGTGCAGCTGGTCTGGGACTGGCTGGCAGGATAGGGACTGGCCGTCCCGCCTCGTGATTGTGACTCACCTGACACGTGACCCATTGG
TGTCTTTCCTACGACTTGTCCAACCATGGGGCGGCCGGCCGGTACCCGTCCGGCCCACCTCGGTGACTTGATCAGAAGGTTGTCCGCCTCAGGGCGTGGC
TCATCACAGTGTTGTTCCGAAGTGACCTCTACCCGGACTGGTATCGGCCGGCAGTGGCCATGCCCATATCCGTGAAGAGGAAAGGAACAATGACCGCCAT
GTCTATCGTCGCGCATTCACATGCGTTTGTCGTCGGTGTCGACACCCACGCCCGCAACCACGTTTACGCCATCATCACCGCCACGACCGGTGAACTCGTC
GATACCCGGGACTTCCCCACGACCGGCGCCGGCATCAACCGAGCCACCGCGTGGGTGGCACGCCGCACGGGTGCTGATCTCGCCGTGCTCTGGGTGATCG
AGGGCGCAGCCTCCTACGGGGCCATACTCGCCGGAACCGTGGTTACAAAGGGATACTCGGTTGTCGAGGCAGCACGGATGGACGCCAAATCCCACCACGG
CGTAGGCAAATCCGACGTGCTCGATGCCCAACGAATCGCCCGGGCCGTGCTCCCGATGCAGGAGAAGCAACTGCGCCGGCCGCGGCTGAATGAAGGCGTC
CGTGCTGCCCTGAGGGTTTTGGTATCTGCGCGTCATTCCATGACCGGGGAGCGGACACGGGCGGTGAACGGGCTGACTGCCTTGGTGCGCGTCAATGAGC
TCGGCCTGGACGCCCGCAAGGCCCTGACCGGAGCGCAGATTACCGAGGTCTCCCGGTGGCGTGAGCAGGACGAGGAACTGGCGCTTTCCGTGGCCCGCAC
CGAAGCGGTCCGGTTGGCCAAGCGGATCGGTGACCTCGACAAAGACGTGGCGGGCAACACCCAGCAGATCACCGAGCTGGTCAAGGTCAGCGAGGCGGCA
CCGCTCTTGGATGTGAAGGGCTTCGGCGCCATCACGGCCGCCACATGCCTGACAGTCTGGTCCCATCAGGGCCGGGTGCATTCGGAAGCCGCATACGCCT
CCCTCGCCGGGGTAAACCCGATCCCGGCCTCATCGGGGAACACCGTCCGTCACCGACTCAACCGCGGCGGCGACCGGTCTCTGAACAGCGCGCTTCACAT
GGTCGCCATCACGCGGATGACTCACGACGAGGAAACCCGCGAATACGTGCAGAAGCGGGAAGCGGAAGGACTTAGCACGAAGGAAATCCGACGATGCATC
AAACGCTATCTCGCCCGGCGCGTCTACCGCATTTTCAACTCACAAGCGGAGGCTTTGATCGCCGGTTGACAGACATAGAAGGGTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1080 bp359 aa2901369+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MTAMSIVAHSHAFVVGVDTHARNHVYAIITATTGELVDTRDFPTTGAGINRATAWVARRTGADLAVLWVIEGAASYGAILAGTVVTKGYSVVEAARMDAK
SHHGVGKSDVLDAQRIARAVLPMQEKQLRRPRLNEGVRAALRVLVSARHSMTGERTRAVNGLTALVRVNELGLDARKALTGAQITEVSRWREQDEELALS
VARTEAVRLAKRIGDLDKDVAGNTQQITELVKVSEAAPLLDVKGFGAITAATCLTVWSHQGRVHSEAAYASLAGVNPIPASSGNTVRHRLNRGGDRSLNS
ALHMVAITRMTHDEETREYVQKREAEGLSTKEIRRCIKRYLARRVYRIFNSQAEALIAG

 

Blast result :
Comments
ISAar29 is 76% aa similar to ISAar16.
References
1] ISfinder annotation (2009)