ISAar23

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Arthrobacter arilaitensis
Arthrobacter arilaitensis RE117
DNA section
IS Length : 1449 bp

Ends


IR Length : 20/23

IRL : GGCTCTTCAGAATTGAGAGTGTAGCCACCTAAACCCAACACCCCGGATCC
IRR : GGCTCTTCAGGATTCAGGGTGTAAACGCGATCTAAAGCCACCGGTTTCCA

Insertion site


Left flankDirect repeatRight flankDR Length
TCCTTCCAGGGCTATGGTGACCTCTACC8
GAACTGGCTCGGTAAACCTCAGCCAGAA8
AAATGGCACTGTTTAACCCGGGTATTTC8
GTCCTTTGGACGTATAGCTTGCACCGGT8
GCTGGGGTGCCCTTAAGATACTCGGTGC8
CCAGATAAGTCCATAAACGA0

DNA sequence

GGCTCTTCAGAATTGAGAGTGTAGCCACCTAAACCCAACACCCCGGATCCCGGGCATGTCGTCAATGCATTAAAAAGTCGAGGCCTTCCAGAAGAATGGA
AGTTACCACACTAACCATTTCTAGAGACCTCGACTGTGCACCATTCTATCTATACCCCCGCAAATCTCACGACTTTCACCAACCTTGACGGACTGGGACT
CACCGCCATCGGGCAGCGCCTCACGCCGAAGAAAGCTGAGATCCTCTGCCAAGTGACCAACCCTGACCCATGGTGCCAAACGTGCGGAACGCCCGGAAAT
CCACGCGATACCGTCACCCGGCGCCTGGCCCACGAACCGTTCGGATGGCGGCCCACCGTCCTGGTGATCAAGCACCGCCGCTACCGCTGCAACCACTGCC
AACGAGTCTGGCGTGAAGACCTCAGCCAAGCGGTAGCGCCACGACAGAAAATCAGCCGGACCGGGCTACGCTGGGCTTTGGCCGGGCTAGTCACCCAGCA
CCTGTCAGTCTCACGGATTGCCGAAGGGCTCGGTGTCACCTGGAATACCGCCAACGAAGCAGTGCTGGCCGAAGGCCAGCGCCTGCTGATAGATGACCCA
ACCCGGTTCAACGGAGTCAAAGTGTTGGGAGTTGATGAGCACGTGTGGCGGCATACCAAAAGTGGAGACAAGTACGTGACGGTCATTGTTGACCTCACCC
CGGTGAAGGCTGGCACTGGCACCGCACGATTGCTCGACATGATTCCCGGACGTTCCAAGGCCGTGTTCAAGACCTGGCTTGCTGAACGCGGTGAAGCATG
GAAAAACAATGTTGAGGTGGTCGCGATGGACGGGTTCACCGGCTTCAAAAGCGCTGCTGCTGAGGAACTGCCCCAAGCCGTAGAAGTCTTGGACCCTTTT
CATGTGGTCAAGCTCGGCTCCGAGGCGTTGGACCAGGCCAGACAACGAGTTCAGCGTGAACAATATGGGCGGCGTGGCCGGAAAGATGATCCGCTGTATA
AGTGCCGGCGTACGCTGACTACAGGTTTATCGCTGGCCACAGAGAAACAGAAACAGCGCGTTGAAGACCTGTTCAACGTTGCGAAGCACGAGCCTGTGCA
ATTGGTCTGGAGCGTTTACCAGAGGATGGTTGATGCCTACCGGCAGAAGAAGCCCGAGATCGGGAAGTGGGCCATGGAACAACTGATCAACGAGATCGGT
ACCAAAGTGCCGAAGGGTTTACCGGAGTTGAAGAAACTCGGTGGTACGCTGCGCAGGCGGAAACCGGATATCCTCGCGTATTTTGATCACATTGGCAGTT
CCAATGGGCCTACTGAAGCACTCAATGGGCGGTTGGAGCACCTGCGGGGTATCGCTTTGGGGTTCACGAATTTGACGCACTATATCGCACGGTCATTGTT
GGAAACCGGTGGCTTTAGATCGCGTTTACACCCTGAATCCTGAAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1308 bp435 aa1361443+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

VHHSIYTPANLTTFTNLDGLGLTAIGQRLTPKKAEILCQVTNPDPWCQTCGTPGNPRDTVTRRLAHEPFGWRPTVLVIKHRRYRCNHCQRVWREDLSQAV
APRQKISRTGLRWALAGLVTQHLSVSRIAEGLGVTWNTANEAVLAEGQRLLIDDPTRFNGVKVLGVDEHVWRHTKSGDKYVTVIVDLTPVKAGTGTARLL
DMIPGRSKAVFKTWLAERGEAWKNNVEVVAMDGFTGFKSAAAEELPQAVEVLDPFHVVKLGSEALDQARQRVQREQYGRRGRKDDPLYKCRRTLTTGLSL
ATEKQKQRVEDLFNVAKHEPVQLVWSVYQRMVDAYRQKKPEIGKWAMEQLINEIGTKVPKGLPELKKLGGTLRRRKPDILAYFDHIGSSNGPTEALNGRL
EHLRGIALGFTNLTHYIARSLLETGGFRSRLHPES

 

Blast result :
Comments
ISAar23 is 92% aa similar to ISAar19.
References
1] ISfinder annotation (2009)