ISFsp15
- Family IS1380
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_009921 | ND | Frankia sp. | Frankia sp. EAN1pec |
DNA section
IS Length : 1695 bp
Ends
IR Length : 10/15
IRL : CCTCGGGCTTTCACGGCGATGATCGTCTGTTGGGGTGTCGGAAATAGGAA
IRR : CCCGGATCTTTCATGCCTTGGGCGGGCGTGACTGACGGTTGACCTTCCAC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TCGCGCACACGGCGCC | TTAG | GGTCCGTCACGGCGCC | 4 |
| CCGAGGACGTGCCGCA | CTAG | GCAGCAGCACCA | 4 |
DNA sequence
CCTCGGGCTTTCACGGCGATGATCGTCTGTTGGGGTGTCGGAAATAGGAAAGTGCTCCTGAGCTGGGAGGATCGGGCTTGTCTAGGGCCTGAATCCATCC
AATCCAAGGAGCACCTTCATGGTGCAGAGTACCGGTGTCTACCCGTCTGTCCGCATCGACGCCGCCGGGCGGGGTGTCGTGTCGGCGGCGGGCAGCGTGC
TGCTGACCGAGACGGTCCGCGTCAGCGGGCTGGGTCGGTTGCTGTCCGACGCGCTCGCGCCGTGGCGGTCGCCGCTGGCGACGCATGACCCGGCGAAGGT
ACTGACCGATCTGGCCGTGGCGCTGGCGTTGGGCGGGGACTGCCTGGCCGATATCACGTTGCTGCGCGCGGAGCCGGCACTGTTCGGGCTGGTGGCCTCG
GACCCGACGGTGTCACGGACGATCGACCGGCTCGCCGGCGACGCCGAGAAGGTCCTGACGGCACTCGACCGGGCCCGCGCGGCAGCGCGGGGCCAGGTAT
GGGCGGCGGCCGGGGAACACGCCCCCGACCACACGGTGTCGGTGCACGACCCGCTGATCGTGGATCTCGACGCGACACTGGTCACCGCCCATTCCGAGAA
ACAAGACGCGGCGCCGACATTCAAACGCGGCTTCGGGTTCCACCCGTTGTGGGCGTTCATCGACCACGGCCAGGCCGGCACCGGGGAACCCGCGACGGTC
CTGCTGCGCCCCGGTAACGCCGGGTCGAACACCGCCGCCGACCACATCACCGTCGCCACCGGCGCCCTCGCCCAGCTCCCGGCCCGGCTACGCCGCTCCC
GCAAGGTACTGATCCGCGCCGACTCCGCCGGTGGGACCCACGCCTTCCTCGCCTGGGCGCACCAGCGCAGGCTGGCCTACTCGGTCGGGTTCACCCTGCC
CGACAACGCCACCCAGCTAATCGCCCGCCTCCCGAAGAAGGCGTGGACACCGGCCTACGACGCCGACCGCCAGCCCCGAACCGGCGCTTTCGTCGCCGAA
CTGTCCGGCCTGATGGACCTGACCGGCTGGCCACCGGGCATGCGTGTCCTCGTCCGCAAGGAACGCCCGCATCCCGGCGCGCAGCTGCGGATCACTGACG
TCGACGGCAACCGGATCACCGCGTTCGCGACCAACAGCGTCCGCGGGCAGCTCGCCGACCTCGAACTACGCCACCGCCGCCGGGCCCGCTGCGAAGACCG
CATCCGAGCCGCCAAGGACACCGGCCTGACCAACCTGCCTCTGCACGACCTCGACCAGAACAGGGTCTGGTGCCAGATCGTCGCGCTCGCCTGCGACCTG
ATCGCCTGGACACAGATGCTCGCCCTCGCAGACCAGCCAGCCCGACGCTGGGAACCGAAACGGCTACGCCACAGCCTGTTCTGGCTCGCGGGACGGCTCG
CCCACCACGCCCGCCAGAGCGTGCTCCACCTCGCCGCCCACCACCCCTGGACACCACTCGCCATCCAGGCGATCACCACGCTGCGCGCCCTACCCGCTCC
CGGATAGCCCCGGCCACCGACCTCCCACCCCACCGACCAGAAGGAACCCCACCCGGACGTGGACCGGGCGCCCACCCCGCGCGACAGCGGGTCACCCCGC
CACGGCCACACCCAGGCCAGACGCCACAACTCAACATCAACAAAGGTGGAAGGTCAACCGTCAGTCACGCCCGCCCAAGGCATGAAAGATCCGGG
AATCCAAGGAGCACCTTCATGGTGCAGAGTACCGGTGTCTACCCGTCTGTCCGCATCGACGCCGCCGGGCGGGGTGTCGTGTCGGCGGCGGGCAGCGTGC
TGCTGACCGAGACGGTCCGCGTCAGCGGGCTGGGTCGGTTGCTGTCCGACGCGCTCGCGCCGTGGCGGTCGCCGCTGGCGACGCATGACCCGGCGAAGGT
ACTGACCGATCTGGCCGTGGCGCTGGCGTTGGGCGGGGACTGCCTGGCCGATATCACGTTGCTGCGCGCGGAGCCGGCACTGTTCGGGCTGGTGGCCTCG
GACCCGACGGTGTCACGGACGATCGACCGGCTCGCCGGCGACGCCGAGAAGGTCCTGACGGCACTCGACCGGGCCCGCGCGGCAGCGCGGGGCCAGGTAT
GGGCGGCGGCCGGGGAACACGCCCCCGACCACACGGTGTCGGTGCACGACCCGCTGATCGTGGATCTCGACGCGACACTGGTCACCGCCCATTCCGAGAA
ACAAGACGCGGCGCCGACATTCAAACGCGGCTTCGGGTTCCACCCGTTGTGGGCGTTCATCGACCACGGCCAGGCCGGCACCGGGGAACCCGCGACGGTC
CTGCTGCGCCCCGGTAACGCCGGGTCGAACACCGCCGCCGACCACATCACCGTCGCCACCGGCGCCCTCGCCCAGCTCCCGGCCCGGCTACGCCGCTCCC
GCAAGGTACTGATCCGCGCCGACTCCGCCGGTGGGACCCACGCCTTCCTCGCCTGGGCGCACCAGCGCAGGCTGGCCTACTCGGTCGGGTTCACCCTGCC
CGACAACGCCACCCAGCTAATCGCCCGCCTCCCGAAGAAGGCGTGGACACCGGCCTACGACGCCGACCGCCAGCCCCGAACCGGCGCTTTCGTCGCCGAA
CTGTCCGGCCTGATGGACCTGACCGGCTGGCCACCGGGCATGCGTGTCCTCGTCCGCAAGGAACGCCCGCATCCCGGCGCGCAGCTGCGGATCACTGACG
TCGACGGCAACCGGATCACCGCGTTCGCGACCAACAGCGTCCGCGGGCAGCTCGCCGACCTCGAACTACGCCACCGCCGCCGGGCCCGCTGCGAAGACCG
CATCCGAGCCGCCAAGGACACCGGCCTGACCAACCTGCCTCTGCACGACCTCGACCAGAACAGGGTCTGGTGCCAGATCGTCGCGCTCGCCTGCGACCTG
ATCGCCTGGACACAGATGCTCGCCCTCGCAGACCAGCCAGCCCGACGCTGGGAACCGAAACGGCTACGCCACAGCCTGTTCTGGCTCGCGGGACGGCTCG
CCCACCACGCCCGCCAGAGCGTGCTCCACCTCGCCGCCCACCACCCCTGGACACCACTCGCCATCCAGGCGATCACCACGCTGCGCGCCCTACCCGCTCC
CGGATAGCCCCGGCCACCGACCTCCCACCCCACCGACCAGAAGGAACCCCACCCGGACGTGGACCGGGCGCCCACCCCGCGCGACAGCGGGTCACCCCGC
CACGGCCACACCCAGGCCAGACGCCACAACTCAACATCAACAAAGGTGGAAGGTCAACCGTCAGTCACGCCCGCCCAAGGCATGAAAGATCCGGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1397 bp | 462 aa | 111 | 1507 | + | No |
Chemistry : DDE
ORF sequence :
MVQSTGVYPSVRIDAAGRGVVSAAGSVLLTETVRVSGLGRLLSDALAPWRSPLATHDPAKVLTDLAVALALGGDCLADITLLRAEPALFGLVASDPTVSR
TIDRLAGDAEKVLTALDRARAAARGQVWAAAGEHAPDHTVSVHDPLIVDLDATLVTAHSEKQDAAPTFKRGFGFHPLWAFIDHGQAGTGEPATVLLRPGN
AGSNTAADHITVATGALAQLPARLRRSRKVLIRADSAGGTHAFLAWAHQRRLAYSVGFTLPDNATQLIARLPKKAWTPAYDADRQPRTGAFVAELSGLMD
LTGWPPGMRVLVRKERPHPGAQLRITDVDGNRITAFATNSVRGQLADLELRHRRRARCEDRIRAAKDTGLTNLPLHDLDQNRVWCQIVALACDLIAWTQM
LALADQPARRWEPKRLRHSLFWLAGRLAHHARQSVLHLAAHHPWTPLAIQAITTLRALPAPG
TIDRLAGDAEKVLTALDRARAAARGQVWAAAGEHAPDHTVSVHDPLIVDLDATLVTAHSEKQDAAPTFKRGFGFHPLWAFIDHGQAGTGEPATVLLRPGN
AGSNTAADHITVATGALAQLPARLRRSRKVLIRADSAGGTHAFLAWAHQRRLAYSVGFTLPDNATQLIARLPKKAWTPAYDADRQPRTGAFVAELSGLMD
LTGWPPGMRVLVRKERPHPGAQLRITDVDGNRITAFATNSVRGQLADLELRHRRRARCEDRIRAAKDTGLTNLPLHDLDQNRVWCQIVALACDLIAWTQM
LALADQPARRWEPKRLRHSLFWLAGRLAHHARQSVLHLAAHHPWTPLAIQAITTLRALPAPG
Blast result :
Comments
ISFsp15 is 72% aa similar to IS1676.
References
1] Isfinder annotation (2009)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Saunders,E., Brettin,T., Bruce,D., Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Rawnsley,T., Niemann,J., Benson,D.R., Huang,Y., Mastronunzio,J., Bassi,C.A., Tisa,L.S. and Richardson,P. (2007) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Saunders,E., Brettin,T., Bruce,D., Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Rawnsley,T., Niemann,J., Benson,D.R., Huang,Y., Mastronunzio,J., Bassi,C.A., Tisa,L.S. and Richardson,P. (2007) Direct submission GenBank.