ISClsp2

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAYW02000013 ND Clostridium sp.
Clostridium sp. L2-50
DNA section
IS Length : 1666 bp

Ends


IR Length : 14/21

IRL : CCTTATTCCGTGAAACTTACCATAGTGTTACATCCCTTTTTTTCAGCAAT
IRR : CCATATTTGTTATTGTATACTAAATTTTGAAAATGCTGCATAATTTTGCG

Insertion site


Left flankDirect repeatRight flankDR Length
TGAAAATCCACAAACTTCAA0

DNA sequence

CCTTATTCCGTGAAACTTACCATAGTGTTACATCCCTTTTTTTCAGCAATAATACCTGCTGGAAACTGATTTTCGCAATACATTTTATTTCACCCACTAG
GTTAAACAAAATTTTGTTTTTTTACTGTATCATCATGCATTATCCTGTATAATGAAAGTATCAAAAGATAGGCGGAGGCAGTGCAATGAAGAAAATACAC
ATTGAATTCAGCGATGAGCGGCTCATTACTCCCAGTGGTCTGGTATTCGTAGGGCAAATACTTGGAAAAAGCAGTTTTGTTAAAAAAATCAACCGTGCTC
CAATTTCAAAAGATTATCTGCAGAAACAGATAAAAAATGGAGACGTGCTCCTCACCTATATTGGTATGCTCTGTCAGGGAAAACCCCAGTATGAGGCTGT
CCGTGAAATGATAGATGACCCTGACTACTACAAATACGCATTAGGCATCTCCTATGCGATTCCTTCCGCCGAAACACTCCGTCAGCGTTTTGACATGATC
GGGGATTCCCTGCGCAAAGACATCCAGCAGGCAAATGTCGACATGCTGCGTGAAATGCACATAGAGCCGACAGCCCTGGATAACGGCTTTGTTCCTGTCG
ATATTGATGTAACCCCCTTTGACAATTCGAAATCCAATAAGGAAGGCGTATCCCGTACCTACAAGGGTTTTGACGGATATGCACCAATTATGGCATATAT
CGGCACAGAAGGATACCTCGTCAATCTTGAACTGCGGATTGGGAAACAGCACTGCCAGAAAGAAACTCCTGATTTCCTGAGAGAGACCATTGAACTGTGC
AGACAGCTGACGGAAAAACCACTGCTCATCCGGCTAGATTCCGGCAACGATGCATCTGAAAACATAGGCATCTTTATGGAAGAAAGCTATAAATACAACA
ATGTGTCTTTCATCATAAAACGGAATCCCAGACAGGAAAGTAAAGAAGAATGGCTGGAATCCGTCAGGGAATGCTGCCAGAATATCCAGCATCCACGTGA
TGGGAAAACTGTTTATATCGGACAGACCTTCCGGAATGTGACATATTCCCTTTCTGATAACGAGGAGAAAACTGTCGGAATACGCACAATTTATGAGATC
ACGGAAAGAACCATTGACCGATATGGGCAGTATTTTATCGTACCCGATATAGAACTGGGCACATACTGGACAAACACTTCCCTGCCAGACGAAACAGTCA
TTAATCTTTACCATGCCCACGGAGAAAGTGAGCAGTATCACAGTGAAATCAAGACGGACATGGATGTTGGAAGACTCCCGTCGGGAAAGTTTGAGAGCAA
CAAACTGGTGCTAGAGCTGACAATGATCGCATATAATATCCTTCGAATCATAGGGCAGGAATCGCTGAAAAAGAAGGATGCTCCCGGCCGGAAGAAAATA
CATCGCCGAAGAATACGTACGGTGATCAGTAATCTTATGCAGTTTGCGGGACATCTGACAGAACATGCCGGCCGTCTGGTGCTGTCCATTGGAAGGAGTA
ATCGCTGGAGATTTACTTTCAAGCGTCTTTATGACAGCTTTGCATTCATCACCTGACAACAGGTAGCTGAATATGGCAATGGCAGCTGCACACAAATGGT
GCAGTCTTTTTTTGAACGCAAAATTATGCAGCATTTTCAAAATTTAGTATACAATAACAAATATGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1372 bp456 aa1851556+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKKIHIEFSDERLITPSGLVFVGQILGKSSFVKKINRAPISKDYLQKQIKNGDVLLTYIGMLCQGKPQYEAVREMIDDPDYYKYALGISYAIPSAETLRQ
RFDMIGDSLRKDIQQANVDMLREMHIEPTALDNGFVPVDIDVTPFDNSKSNKEGVSRTYKGFDGYAPIMAYIGTEGYLVNLELRIGKQHCQKETPDFLRE
TIELCRQLTEKPLLIRLDSGNDASENIGIFMEESYKYNNVSFIIKRNPRQESKEEWLESVRECCQNIQHPRDGKTVYIGQTFRNVTYSLSDNEEKTVGIR
TIYEITERTIDRYGQYFIVPDIELGTYWTNTSLPDETVINLYHAHGESEQYHSEIKTDMDVGRLPSGKFESNKLVLELTMIAYNILRIIGQESLKKKDAP
GRKKIHRRRIRTVISNLMQFAGHLTEHAGRLVLSIGRSNRWRFTFKRLYDSFAFIT

 

Blast result :
Comments
ISClsp2 is 60% aa similar to ISDre4.
References
1] ISfinder annotation (2009)
2] Sudarsanam,P., Ley,R., Guruge,J., Turnbaugh,P.J., Mahowald,M., Liep,D. and Gordon,J. (2007) Direct submission GenBank.