ISClsp2
- Family IS1380
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAYW02000013 | ND | Clostridium sp. | Clostridium sp. L2-50 |
DNA section
IS Length : 1666 bp
Ends
IR Length : 14/21
IRL : CCTTATTCCGTGAAACTTACCATAGTGTTACATCCCTTTTTTTCAGCAAT
IRR : CCATATTTGTTATTGTATACTAAATTTTGAAAATGCTGCATAATTTTGCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGAAAATCCA | CAAACTTCAA | 0 |
DNA sequence
CCTTATTCCGTGAAACTTACCATAGTGTTACATCCCTTTTTTTCAGCAATAATACCTGCTGGAAACTGATTTTCGCAATACATTTTATTTCACCCACTAG
GTTAAACAAAATTTTGTTTTTTTACTGTATCATCATGCATTATCCTGTATAATGAAAGTATCAAAAGATAGGCGGAGGCAGTGCAATGAAGAAAATACAC
ATTGAATTCAGCGATGAGCGGCTCATTACTCCCAGTGGTCTGGTATTCGTAGGGCAAATACTTGGAAAAAGCAGTTTTGTTAAAAAAATCAACCGTGCTC
CAATTTCAAAAGATTATCTGCAGAAACAGATAAAAAATGGAGACGTGCTCCTCACCTATATTGGTATGCTCTGTCAGGGAAAACCCCAGTATGAGGCTGT
CCGTGAAATGATAGATGACCCTGACTACTACAAATACGCATTAGGCATCTCCTATGCGATTCCTTCCGCCGAAACACTCCGTCAGCGTTTTGACATGATC
GGGGATTCCCTGCGCAAAGACATCCAGCAGGCAAATGTCGACATGCTGCGTGAAATGCACATAGAGCCGACAGCCCTGGATAACGGCTTTGTTCCTGTCG
ATATTGATGTAACCCCCTTTGACAATTCGAAATCCAATAAGGAAGGCGTATCCCGTACCTACAAGGGTTTTGACGGATATGCACCAATTATGGCATATAT
CGGCACAGAAGGATACCTCGTCAATCTTGAACTGCGGATTGGGAAACAGCACTGCCAGAAAGAAACTCCTGATTTCCTGAGAGAGACCATTGAACTGTGC
AGACAGCTGACGGAAAAACCACTGCTCATCCGGCTAGATTCCGGCAACGATGCATCTGAAAACATAGGCATCTTTATGGAAGAAAGCTATAAATACAACA
ATGTGTCTTTCATCATAAAACGGAATCCCAGACAGGAAAGTAAAGAAGAATGGCTGGAATCCGTCAGGGAATGCTGCCAGAATATCCAGCATCCACGTGA
TGGGAAAACTGTTTATATCGGACAGACCTTCCGGAATGTGACATATTCCCTTTCTGATAACGAGGAGAAAACTGTCGGAATACGCACAATTTATGAGATC
ACGGAAAGAACCATTGACCGATATGGGCAGTATTTTATCGTACCCGATATAGAACTGGGCACATACTGGACAAACACTTCCCTGCCAGACGAAACAGTCA
TTAATCTTTACCATGCCCACGGAGAAAGTGAGCAGTATCACAGTGAAATCAAGACGGACATGGATGTTGGAAGACTCCCGTCGGGAAAGTTTGAGAGCAA
CAAACTGGTGCTAGAGCTGACAATGATCGCATATAATATCCTTCGAATCATAGGGCAGGAATCGCTGAAAAAGAAGGATGCTCCCGGCCGGAAGAAAATA
CATCGCCGAAGAATACGTACGGTGATCAGTAATCTTATGCAGTTTGCGGGACATCTGACAGAACATGCCGGCCGTCTGGTGCTGTCCATTGGAAGGAGTA
ATCGCTGGAGATTTACTTTCAAGCGTCTTTATGACAGCTTTGCATTCATCACCTGACAACAGGTAGCTGAATATGGCAATGGCAGCTGCACACAAATGGT
GCAGTCTTTTTTTGAACGCAAAATTATGCAGCATTTTCAAAATTTAGTATACAATAACAAATATGG
GTTAAACAAAATTTTGTTTTTTTACTGTATCATCATGCATTATCCTGTATAATGAAAGTATCAAAAGATAGGCGGAGGCAGTGCAATGAAGAAAATACAC
ATTGAATTCAGCGATGAGCGGCTCATTACTCCCAGTGGTCTGGTATTCGTAGGGCAAATACTTGGAAAAAGCAGTTTTGTTAAAAAAATCAACCGTGCTC
CAATTTCAAAAGATTATCTGCAGAAACAGATAAAAAATGGAGACGTGCTCCTCACCTATATTGGTATGCTCTGTCAGGGAAAACCCCAGTATGAGGCTGT
CCGTGAAATGATAGATGACCCTGACTACTACAAATACGCATTAGGCATCTCCTATGCGATTCCTTCCGCCGAAACACTCCGTCAGCGTTTTGACATGATC
GGGGATTCCCTGCGCAAAGACATCCAGCAGGCAAATGTCGACATGCTGCGTGAAATGCACATAGAGCCGACAGCCCTGGATAACGGCTTTGTTCCTGTCG
ATATTGATGTAACCCCCTTTGACAATTCGAAATCCAATAAGGAAGGCGTATCCCGTACCTACAAGGGTTTTGACGGATATGCACCAATTATGGCATATAT
CGGCACAGAAGGATACCTCGTCAATCTTGAACTGCGGATTGGGAAACAGCACTGCCAGAAAGAAACTCCTGATTTCCTGAGAGAGACCATTGAACTGTGC
AGACAGCTGACGGAAAAACCACTGCTCATCCGGCTAGATTCCGGCAACGATGCATCTGAAAACATAGGCATCTTTATGGAAGAAAGCTATAAATACAACA
ATGTGTCTTTCATCATAAAACGGAATCCCAGACAGGAAAGTAAAGAAGAATGGCTGGAATCCGTCAGGGAATGCTGCCAGAATATCCAGCATCCACGTGA
TGGGAAAACTGTTTATATCGGACAGACCTTCCGGAATGTGACATATTCCCTTTCTGATAACGAGGAGAAAACTGTCGGAATACGCACAATTTATGAGATC
ACGGAAAGAACCATTGACCGATATGGGCAGTATTTTATCGTACCCGATATAGAACTGGGCACATACTGGACAAACACTTCCCTGCCAGACGAAACAGTCA
TTAATCTTTACCATGCCCACGGAGAAAGTGAGCAGTATCACAGTGAAATCAAGACGGACATGGATGTTGGAAGACTCCCGTCGGGAAAGTTTGAGAGCAA
CAAACTGGTGCTAGAGCTGACAATGATCGCATATAATATCCTTCGAATCATAGGGCAGGAATCGCTGAAAAAGAAGGATGCTCCCGGCCGGAAGAAAATA
CATCGCCGAAGAATACGTACGGTGATCAGTAATCTTATGCAGTTTGCGGGACATCTGACAGAACATGCCGGCCGTCTGGTGCTGTCCATTGGAAGGAGTA
ATCGCTGGAGATTTACTTTCAAGCGTCTTTATGACAGCTTTGCATTCATCACCTGACAACAGGTAGCTGAATATGGCAATGGCAGCTGCACACAAATGGT
GCAGTCTTTTTTTGAACGCAAAATTATGCAGCATTTTCAAAATTTAGTATACAATAACAAATATGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1372 bp | 456 aa | 185 | 1556 | + | No |
Chemistry : DDE
ORF sequence :
MKKIHIEFSDERLITPSGLVFVGQILGKSSFVKKINRAPISKDYLQKQIKNGDVLLTYIGMLCQGKPQYEAVREMIDDPDYYKYALGISYAIPSAETLRQ
RFDMIGDSLRKDIQQANVDMLREMHIEPTALDNGFVPVDIDVTPFDNSKSNKEGVSRTYKGFDGYAPIMAYIGTEGYLVNLELRIGKQHCQKETPDFLRE
TIELCRQLTEKPLLIRLDSGNDASENIGIFMEESYKYNNVSFIIKRNPRQESKEEWLESVRECCQNIQHPRDGKTVYIGQTFRNVTYSLSDNEEKTVGIR
TIYEITERTIDRYGQYFIVPDIELGTYWTNTSLPDETVINLYHAHGESEQYHSEIKTDMDVGRLPSGKFESNKLVLELTMIAYNILRIIGQESLKKKDAP
GRKKIHRRRIRTVISNLMQFAGHLTEHAGRLVLSIGRSNRWRFTFKRLYDSFAFIT
RFDMIGDSLRKDIQQANVDMLREMHIEPTALDNGFVPVDIDVTPFDNSKSNKEGVSRTYKGFDGYAPIMAYIGTEGYLVNLELRIGKQHCQKETPDFLRE
TIELCRQLTEKPLLIRLDSGNDASENIGIFMEESYKYNNVSFIIKRNPRQESKEEWLESVRECCQNIQHPRDGKTVYIGQTFRNVTYSLSDNEEKTVGIR
TIYEITERTIDRYGQYFIVPDIELGTYWTNTSLPDETVINLYHAHGESEQYHSEIKTDMDVGRLPSGKFESNKLVLELTMIAYNILRIIGQESLKKKDAP
GRKKIHRRRIRTVISNLMQFAGHLTEHAGRLVLSIGRSNRWRFTFKRLYDSFAFIT
Blast result :
Comments
ISClsp2 is 60% aa similar to ISDre4.
References
1] ISfinder annotation (2009)
2] Sudarsanam,P., Ley,R., Guruge,J., Turnbaugh,P.J., Mahowald,M., Liep,D. and Gordon,J. (2007) Direct submission GenBank.
2] Sudarsanam,P., Ley,R., Guruge,J., Turnbaugh,P.J., Mahowald,M., Liep,D. and Gordon,J. (2007) Direct submission GenBank.