ISAar21

  • Family IS4
  • Group IS4
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Arthrobacter arilaitensis
Arthrobacter arilaitensis RE117
DNA section
IS Length : 1396 bp

Ends


IR Length : 16

IRL : CAATACCGTTTACTTAGTGCATTCATGTGTTAATCTGCTCCCATGGCACG
IRR : CAATACCGTTTACTTAACGGGTTTCGGGACTTTCTTCACCAGCCAGCCAG

Insertion site


Left flankDirect repeatRight flankDR Length
CTGGAGGTTCCCGCTAGCCCCCTTTAGCTGGCAAAACGTT0
TGAAAAATCTGGGTTAAACGCCGCTAGCCCAGACTCTTCA0

DNA sequence

CAATACCGTTTACTTAGTGCATTCATGTGTTAATCTGCTCCCATGGCACGCAGCGGATGGATGAAACCCGTAGAACCAACACGACTTTCGGACCACGTCT
CCTTAGGCGTACTAGCGAAGGTTTTCCCGCCTTCGCTGGTCAACGAGGTGGTCACCAAAGTCGGCGCCGGCGAGCAGCGCTCACGCCTGCTGCCCGCGTG
GATGATGGTCTACTACGTGATGGCCCTGGCCTTGCATGCTGCAGCTTCCTACGAGGAGGTCATGCGCAACCTGCTCGGCGGTCTGCAATGGATTTCCCAC
CGTACTAGCGAATGGAGCATGCCTACCAAAGCAGCCATTTTCAAGGCCCGTACCCGTCTGGGCGCACCGGTGATGATCGAGCTGTTCGACCAGGCAGCCA
AGCCCTTCGGGCTTCAAACCCCACGGGGGTTCCTGGCCGGGTTGCGCCTGGTCAGTGTGGACGGGACGACCATGGACCTTGCTGATACGCCCGCCAACGA
GCGGGCCTACGGACGACCGGGAACGAACACCGAATTCAAGAGCGCTTTCCCTCAAGCACGACTCCTGGGACTGGTGGAATGCTCCACGCACGCCATTATC
GGCGCGGTGACCGGGCCTTACACTACCGCGGAAAACGACATGTATCCCGGGCTGCACCACAAGCTGGATTCGAGCATGCTTCTGATGGCTGACCGCGGTT
TCTTCAGCTACCGATCTTTCAAGGACAGTGCCGCAACCGGAGCCCAATTGCTCTGGCGGGTGCGCGGAAACATGGTCCTTCCCGTGCATGAGGAATTCGA
AGACGGCTCGTACCTTTCTGCCGTCTACGAAGGGACCAAGGAACGCCGGAACAACGTGGATCCCATCCGCGTGCGTGTGGTGGAATACGCGGTCGGTGAC
GGAGAGAAGACCAGTGAATTCCGGTTGCTCACCACAATCTTGGATCCCGGTATCGCCTCGGCGCGCGAGCTGGCCGAGGCTTATGCGAAGCGATGGGAGA
TTGAGTTGTGCTTCAAGGAAATGAAAACCCATCAGCGCGGGCCTTCGGTGGTGCTGCGGTCGAAAACCCCTGAGGGCGTCCTTCAGGAAATCTATGGGTA
CCTTTGCGCTCACTATGCGCTGCGCACGTTGATTGGCGAGGTAGCTGCAGAGTTTGACGAGGATCCGTTGCGGATCTCATTCACCCGTACGTTACGGGCC
GCCCGGCGTTCGATGGCCACGCGGCCCGGTTTTTACCCCTGAAAATCTGCGGACATCATTTGCCGCGTTCTGTTCAGAACTTCTTCACGAGCTATTACCC
GAGCGTCGAGACCGGGTCAATCCACGTGTGGTGAAGCGGGAGATGTCTGGCTGGCTGGTGAAGAAAGTCCCGAAACCCGTTAAGTAAACGGTATTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1200 bp399 aa431242+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MARSGWMKPVEPTRLSDHVSLGVLAKVFPPSLVNEVVTKVGAGEQRSRLLPAWMMVYYVMALALHAAASYEEVMRNLLGGLQWISHRTSEWSMPTKAAIF
KARTRLGAPVMIELFDQAAKPFGLQTPRGFLAGLRLVSVDGTTMDLADTPANERAYGRPGTNTEFKSAFPQARLLGLVECSTHAIIGAVTGPYTTAENDM
YPGLHHKLDSSMLLMADRGFFSYRSFKDSAATGAQLLWRVRGNMVLPVHEEFEDGSYLSAVYEGTKERRNNVDPIRVRVVEYAVGDGEKTSEFRLLTTIL
DPGIASARELAEAYAKRWEIELCFKEMKTHQRGPSVVLRSKTPEGVLQEIYGYLCAHYALRTLIGEVAAEFDEDPLRISFTRTLRAARRSMATRPGFYP

 

Blast result :
Comments
ISAar21 is 65% aa similar to ISMfl1.
References
1] ISfinder annotation (2009)