ISAar20

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Arthrobacter arilaitensis
Arthrobacter arilaitensis RE117
DNA section
IS Length : 1449 bp

Ends


IR Length : 26/27

IRL : GGCTCTTCAGGATTGAGAGTGTAGCCACCTAAAACCAACACCCGGGATCC
IRR : GGCTCTTCAGGATTGAGAGTGTAACCAAGGCCTAAACCCGCCAGTCTCCA

Insertion site


Left flankDirect repeatRight flankDR Length
TAGCCTACCGGTTTTACCCTCTGAATTT8
TTCAAAGCATAGTTAACTGCTAGCGTCA8

DNA sequence

GGCTCTTCAGGATTGAGAGTGTAGCCACCTAAAACCAACACCCGGGATCCCGGGCATGTCGCCAAAACGCGAAAAAGTCGAGGTCTTCCAGAAGAATGGA
AGTTTCCACACAAACATTCTTGAAAGACCTCGACGTTGCTCAATTCTACCTTCACCGAACCAGACCTCACCACTTTCACCGGACTTGATGGCTTAGGACT
CACCGCAATTGGGCAGTACCTGGGCGCAGCGAAAGCCGAGATCCTCTGCCACGTCACCACCCCGAACCCGTGGTGCCGCACCTGCGGGGGCGAAGGAACA
CCGAGGGATACCGTCACCCGCAGACTTGCCCACCAACCCTTCGGTTGGCGTCCGACCGTCCTGGTCATCAAACACCGACGCTACCGCTGCGGCCACTGCC
AACGGGTGTGGCGTGAAGATCTGTCCAGAGCTGCACCGGAACGCCAGAAAATCAGCAGGACCGGCCTGGCCTGGGCCTTGAACGGTTTGGTCTGCCAACA
CCTCTCCGTCTCACGGATCGCCGAAGGCCTCGGCGTCACTTGGAATACCGCCAACGACGCAGTGCTGGCTGAAGGCCAACGCCTGCTGATCGATGACCCT
GCACGGTTTTCCGGCGTCAAGGTCTTAGGCGTAGACGAACACGTATGGAGGCATACCCGCACCGGCGACAAATACGTCACCGTCATCGTGGATCTCACCG
CCGTGCGCGATGGCACCGGCACCGCACGCCTGCTGGATATGGTTCCAGGAAGGTCCAAAGCCGTATTCAAGACCTGGCTGGCCGGACAAGACGACCAGTG
GAAGCAGGGCATTGACGTGGTCGCGATGGACGGGTTCACCGGCTTCAAAACCGCAGCTGCCGAAGAGCTTCCCCACGCGGTGGAGGTCTTGGATCCGTTC
CATGTCGTCAAATTGGGTTCCGAGGCCCTGGATCAAACCCGGCAGCGGGTCCAGCGCGGACAGCATGGCCGGCGGGGACGCAAGGATGACCCGCTGTATA
AGTGCCGTCGGATCTTGACCACGGGGCTGTCCTTAGCCACTGACAAGCAGAAAGCCAAGCTTGAGGACCTTTTTACGGCGCCGGAGTATGAGCCGGTTCA
ACTGGTCTGGAGCGTGTATCAAAAGATGGTGGATGCCTACCGGCAACCGAAACCAGAGATCGGGCGGTGGGCGTTGGAGCAACTGATCAACGGGGTTGGC
TCAAAGGTCCCGAAGGGGTTGCCGGAGCTGAAGAAGCTCGGTGGCACCCTGCGGCGGAGGAAGACGGACATCCTCGCGTATTTTGACCACGTCGGCAGTT
CAAATGGGCCTACTGAAGCCCTCAATGGCCGGTTAGAGCATTTGCGGGGTATCGCGTTGGGGTTCAAGAATCTGACGCACTATATCGCACGGTCGTTGCT
GGAGACTGGCGGGTTTAGGCCTTGGTTACACTCTCAATCCTGAAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1308 bp435 aa1361443+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

LLNSTFTEPDLTTFTGLDGLGLTAIGQYLGAAKAEILCHVTTPNPWCRTCGGEGTPRDTVTRRLAHQPFGWRPTVLVIKHRRYRCGHCQRVWREDLSRAA
PERQKISRTGLAWALNGLVCQHLSVSRIAEGLGVTWNTANDAVLAEGQRLLIDDPARFSGVKVLGVDEHVWRHTRTGDKYVTVIVDLTAVRDGTGTARLL
DMVPGRSKAVFKTWLAGQDDQWKQGIDVVAMDGFTGFKTAAAEELPHAVEVLDPFHVVKLGSEALDQTRQRVQRGQHGRRGRKDDPLYKCRRILTTGLSL
ATDKQKAKLEDLFTAPEYEPVQLVWSVYQKMVDAYRQPKPEIGRWALEQLINGVGSKVPKGLPELKKLGGTLRRRKTDILAYFDHVGSSNGPTEALNGRL
EHLRGIALGFKNLTHYIARSLLETGGFRPWLHSQS

 

Blast result :
Comments
ISAar20 is 92% aa similar to ISAar19.
References
1] ISfinder annotation (2009)