ISAar19

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Arthrobacter arilaitensis
Arthrobacter arilaitensis RE117
Arthrobacter arilaitensis plasmid pRE117
DNA section
IS Length : 1449 bp

Ends


IR Length : 21/24

IRL : GGCTCTTCAGGAATAAGAGTGTAACCACCTGAAACCAACACCCCGATTCC
IRR : GGCTCTTCAGGATTGAGGGTGTAAACGCCGTCTAAACCCACCGGTCTCCA

Insertion site


Left flankDirect repeatRight flankDR Length
CAGCAGGAGTCCTATTGTCAGGCAAACG8
AACCTGCCTCTTCAATCTGTCTTATTAA8
GATTTGCAGCACATTGAAGCTGATGGAA8
TATGTAGCATCGATATTGTCTTGAGGCT8
GTGCCGGCAAGGATTGCTCCGTACGTCG8
CAGACGATGAATATTTGTTCGGTACAAC8
TTCTTCTCAAATCATAGATGATTGGCTC8
ACAATGTCTCTGGAAAGCTCTCCCAAAG8
TGACATCAAACCATTAGCACTTTCAAGA8
ATTCGGTGACGGTTAAGCGGTGGTAGTT8
TGACGACGTCACTTTCGCCGGTGACCAT8
ACCTGCAGCGCCTTTCCCACGACTCACA8
CGAACTGAATCATTTATCTAAGAGACGT8
TTAAAGTCCCGTAAAAATCGACGACAT7
TAGGGAAAATTCGTTAAGCT0
CTCATTAACGGCCAAACCTG0
GTGCCAAACCCATTAACGGT0
TCGCTTAAAGCATTTATCTA0
TGACGAAAGTTGGGTTTAGA0

DNA sequence

GGCTCTTCAGGAATAAGAGTGTAACCACCTGAAACCAACACCCCGATTCCCGGGCATGTCGCCGAGCACGAAAAAGTCGAGGTCTTCCAGAAGAATGGAA
GTTACTACACTAGCCATTTTCGAAAGACCTCGACGTTGCTCAATCCTACCTTCACCGCACCAGACCTCACCACTTTCACCAATCTTGACGGCTTGGGACT
GACCGCAATCGGGCAACACCTGAGCGCAGCGAAAGCCGAAATCCTCTGCCACGTCACCAACCCGATCCCTTGGTGCCAAACCTGCGGAGCAGCAGGCATT
CCACGCGATACCGTCACTCGCCGCCTCGCCCACGAACCATTGGGCTGGCGTCCCACTGTCCTAGTCATCAAACACCGCCGCTACCGTTGCGCCAATTGCC
AACGAGTCTGGCGTGAAGAGCTGTCCCAAGCAGTAGCGCCACGCCAGAAAATCAGCAGGACCGGGCTACGCTGGGCGCTGGTTGGACTGGTCTGCCACCA
CTTGTCAGTCTCCCGAATTGCCGAAGGCCTCGGCGTCACCTGGAATACCGCCAATGAGGCTGTGCTGGCTGAAGGTCAACGCTTACTGATTGATGATCCA
ACCCGCTTCGACGGGGTCAAAGTGCTGGGAGTCGATGAACATGTTTGGCGGCATACCCGAACCGGCGACAAATACGTCACCGTGATTGTGGACCTCACCG
CGGTGCGTGACGGCACCGGTACCGCACGACTGATCGACATGGTCCCTGGAAGATCCAAAGCTGTATTCAAAACCTGGCTGGCTGATCAAGAAGAACAATG
GAAACAGGGCATTGAAGTCGTCGCAATGGACGGTTTCACCGGCTTCAAAACAGCTGCCGTCGAGGAGCTACCCCACGCGGTGGAGGTGTTGGATCCATTC
CATGTAGTCAAACTAGGTTCCGAGGCGCTGGACCAGACCCGGCAACGGATTCAACGTGAGCAACATGGGCGTCGAGGACGCAAGGATGACCCGCTTTACA
AGTGCAGGCGAACGCTGACCACGGGACTATCCTTGGCTACGGAAAAGCAGAAGACCAAGCTTGAAGACCTGTTCAAGGAGCCGGAGTATGAGCCGGTTCA
ATTGGTCTGGAGCGTGTATCAGAAGATGGTGGATGCCTACCGGCAACCGAAGCCCGAGGTCGGACGGTGGGCCTTGGAGCAACTGATCAACGAAGTTGGC
ACGAAGGTACCGAAAGGGTTGCCGGAGCTGAAAAAGCTCGGCGGCACCCTGCGCAGGAGGAAGACGGACATTCTCGCGTACTTTGATCATATTGGTAGTT
CGAATGGTCCTACCGAGGCTTTGAATGGCAGGTTGGAGCATCTGCGAGGTATCGCGTTGGGGTTCAAGAATCTGGCGCACTATATCGCCCGGTCGTTGTT
GGAGACCGGTGGGTTTAGACGGCGTTTACACCCTCAATCCTGAAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1308 bp435 aa1361443+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

LLNPTFTAPDLTTFTNLDGLGLTAIGQHLSAAKAEILCHVTNPIPWCQTCGAAGIPRDTVTRRLAHEPLGWRPTVLVIKHRRYRCANCQRVWREELSQAV
APRQKISRTGLRWALVGLVCHHLSVSRIAEGLGVTWNTANEAVLAEGQRLLIDDPTRFDGVKVLGVDEHVWRHTRTGDKYVTVIVDLTAVRDGTGTARLI
DMVPGRSKAVFKTWLADQEEQWKQGIEVVAMDGFTGFKTAAVEELPHAVEVLDPFHVVKLGSEALDQTRQRIQREQHGRRGRKDDPLYKCRRTLTTGLSL
ATEKQKTKLEDLFKEPEYEPVQLVWSVYQKMVDAYRQPKPEVGRWALEQLINEVGTKVPKGLPELKKLGGTLRRRKTDILAYFDHIGSSNGPTEALNGRL
EHLRGIALGFKNLAHYIARSLLETGGFRRRLHPQS

 

Blast result :
Comments
ISAar19 is 72% aa similar to ISBli1.
There are 17 copies of this IS in this genome.
References
1] ISfinder annotation (2009)