ISAar18

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Arthrobacter arilaitensis
Arthrobacter arilaitensis RE117
DNA section
IS Length : 1386 bp

Ends


Left end : CTGTGAGTATTGAGGTGGCTGGTCTGTGACTGGCTGGCAGGGTAGGTTCTGGTTACCTCGTCTCGACTGTGACTCAACACCCCCTCGGCGATCTGGTGGC
Right end : TTTGAAAAGGTACTTAGCCAGGCGCCTGTATCGCATATTAAACGCACTTCATTCGTTGCCCGACGCCCCGCTTTCGTCTTGTTGACAGATATAGAAGATT

Insertion site


Left flankDirect repeatRight flankDR Length
CAACACCCCCCGGATCATTG0

DNA sequence

CTGTGAGTATTGAGGTGGCTGGTCTGTGACTGGCTGGCAGGGTAGGTTCTGGTTACCTCGTCTCGACTGTGACTCAACACCCCCTCGGCGATCTGGTGGC
CTTGGATCCGAATTGTCCGGTTGCGACGATGTGACCAGCGCCGATCTTGTCCGCTTCGATGGCTTGATAAGAAGATTGCCCAACGTAAAGCGTTGTGGCT
CATCACAGGAATGCCTCGCGAGTGAACACCGCCGGCTCATCGGCCCACCGGGAGGCAGCGGGTAGGGCTGCCTAATCGAGAGGAACTCACGATGACCACG
ATCGCGAACACTTACGCGTTTATTATCGGCGTCGATACCCACGCGCGAACCCACACCTACGCCGTGATCGCTCCAAACGGCGAGCAGATAGGGACGGAGA
GTTTTCCCAATTCGCTTGCCGGCAGGAAACGTGCAATCGCGTGGGTCAATCGAAGAACTCAAAGTGAAGTTCGAGTACTTTGGGTTATCGAAGGCGTCGG
CAGCTATGGAGCACTATTAGCCGGTGCGGTGTCCAATAGCGGCTATCGTGTGGTCGAAGCTCCCCGCCGGTATGCCCCTGCCCGGCGTGGCGCTGGAAAA
ACCGATCCAATTGACGCCGCCGCGATTGCCGCTGCGGCCCTGCCGTTGATTGAGCAAGAATTGCGGATTCCGAGGCAGGCCGATGGGATTCGGGCGGCAT
TGCGGGTTCTGACCGCGGCGAGGGAACAGATGACTCTGGAGCGGACGTCAAAGATCAATGCTCTCACTGCCCTTTTGCGGATCGTGGATTTAGGTGTTGA
CGCTCGGAAACCACTGACTGAAACACAGATCGTCCAGGTTTCTTCGTGGCGAGAGCGTGATGAAGGCATTGATCGTGTGTTTGCTCGTGCTGAGTCGACT
CGAATGGCGAAACGTGTGCTCGTGCTCAACGTTGATCTCAAGGACAACCAAGAGAAGATCACGGAGCTGATCGAGTCCAGCCCTGCTGCTCCACTACTTG
AGGTTACCGGTGTCGGTCCGGTGACTGCAGCGGTGGTTTATGCTGCGTGGTCGCATCTTGGCCGGGTGCGTTCCGAGGCAGCATTTGCCGCGTTGGCTGG
CGTTAATCCTATTCCTGCTTCATCTGGCAATGTTGAGCGCCATAGGTTGAATCGTGGTGGTGATCGTCGGCTGAACAGCGCTTTGCATATGGCTACTATC
GTGAGAACAATTCACGATCCAGACACTCGTGCTTACGCAGAACGGAGAAAGTCCGAAGGCAAGTCGTCACGTGAAGTCCGGAGAATTTTGAAAAGGTACT
TAGCCAGGCGCCTGTATCGCATATTAAACGCACTTCATTCGTTGCCCGACGCCCCGCTTTCGTCTTGTTGACAGATATAGAAGATT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1080 bp359 aa2921371+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MTTIANTYAFIIGVDTHARTHTYAVIAPNGEQIGTESFPNSLAGRKRAIAWVNRRTQSEVRVLWVIEGVGSYGALLAGAVSNSGYRVVEAPRRYAPARRG
AGKTDPIDAAAIAAAALPLIEQELRIPRQADGIRAALRVLTAAREQMTLERTSKINALTALLRIVDLGVDARKPLTETQIVQVSSWRERDEGIDRVFARA
ESTRMAKRVLVLNVDLKDNQEKITELIESSPAAPLLEVTGVGPVTAAVVYAAWSHLGRVRSEAAFAALAGVNPIPASSGNVERHRLNRGGDRRLNSALHM
ATIVRTIHDPDTRAYAERRKSEGKSSREVRRILKRYLARRLYRILNALHSLPDAPLSSC

 

Blast result :
Comments
ISAar18 is 75% aa similar to ISAar16.
ISAar18 is inserted into ISAar17.
There are 2 copies of the couple ISAar17-ISAar18 on this genome.
References
1] ISfinder annotation (2009)