ISAar17

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Arthrobacter arilaitensis
Arthrobacter arilaitensis RE117
DNA section
IS Length : 1473 bp

Ends


Left end : CCCGTTATCTTTTTGATAGTCCCTAAAAAGAGGATCATAGGGACTGTCGGCCGACCAATCTCGGCATGGTGTCTTGCCCCTGTCTAACCAATGATCCGGG
Right end : ACCGTCGACTGACGGTCCTGTTTGCGATGATCCGGGATGGCTCACTTTATGATGTTCCGGAGCTGAAAATAGCTTGACACAGAACATAGGGGCACCCCCC

Insertion site


Left flankDirect repeatRight flankDR Length
CTTTGTCCCCTCGCGGAGGC0

DNA sequence

CCCGTTATCTTTTTGATAGTCCCTAAAAAGAGGATCATAGGGACTGTCGGCCGACCAATCTCGGCATGGTGTCTTGCCCCTGTCTAACCAATGATCCGGG
GGGTGTTGCCACCGAGATTGGGATGGCAGCGTGGTGATTGCTGATTAGGGGCGCGGCGCCAGAAAATGGACGCCTGTCATAACGTGGATGTAAGACTTCG
CTACCGACGGTTGGTCGACCTTGAACAGAAACTAGTTCAAAGGAGCACTAGCCATGATCACCACGGACATCGATATTTTCCTCGGACTCGACGTAGGGAA
AACCGACCACTGGGCCTGCGCCGTCACTAAGGACGGCACCAAAATATGGAACAAGACCCTGCCTAACGACGAAGCCAAACTCGTCTCGGTCTACCAGAAT
CTCAGTGCCAAAGGCACCGTCCTGGTCGTCGTGGACCAGCCAGCCACCATCGGAGCCCTCGCTGTTGCGGTCGCCCAGAACCTCGGTATTCCGGTGGCCT
ACCTGCCCGGACTTTCGATGCGGCGGATCGCAGATATGTATCCCGGCACGGCGAAAACCGACGAAAAAGACGCGTTCATCATCGCGGACGCGGCCCGCAC
CATGCCGCACACGCTGCGCAGCATCCAGGTCTCTGATGAGGATGAAGCCACCTTGGGCATGCTCACCGGATTTGATCTGGATCTAGCCAGGCAGATCACC
CAAACCAGCAACAGGATCCGCGGACTGTTCACCCAAATCCACCCACCACTAGAACGAATCCTCGGCCCATGGCTGGAACACGACGCGGTACTTGAAGTCC
TCGCAGCCTGGCCCACCCCAGCCGCGCTGAGGCATGCCGGCAAAGCCCGGATCGATGCGAAGCTGAAGAAATACGGAGCTCGCCGGCACACCGCGTGGGC
TTCAACCGTCATCGACGCCTTGGATGAACAGAGCGTCATCGTGGTCGGCACCGACGCCGCAGGCTTGGTCATCCCTCACCTAGCACGACAAATGATTTCC
TTGCACACACAGCGAGCTGATGTTGCTGCACATCTTGAAACCATGGTGGAGGCCCACCCTCTTTACCCGGTCCTGACATCCATGCCAGGGGTCGCTGTCA
GGACCGCCGCGATCATCATCGCCGAGATCTCCGGCAAGACCTTCACCAGCGCCGCAGCGTTGTCTTCCTACGCTGGTTTGGCACCGACCACGCGCCAGTC
AGGGACTTCGATCAAGTCCGAGCGAGTCAGCCATTCAGGCAATAAACGATTGAAACGTGCGCTCTTCCTTTCGGCGTTCGCGTCCATCCGTTTCGATCCA
GCCAGCCGGGAATATTACGACCGGAAACGAGCTCAAGGTAAACGCCATAACCAGGCGCTCATCGCGTTGGCGCACCGTCGACTGACGGTCCTGTTTGCGA
TGATCCGGGATGGCTCACTTTATGATGTTCCGGAGCTGAAAATAGCTTGACACAGAACATAGGGGCACCCCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1197 bp398 aa2541450+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MITTDIDIFLGLDVGKTDHWACAVTKDGTKIWNKTLPNDEAKLVSVYQNLSAKGTVLVVVDQPATIGALAVAVAQNLGIPVAYLPGLSMRRIADMYPGTA
KTDEKDAFIIADAARTMPHTLRSIQVSDEDEATLGMLTGFDLDLARQITQTSNRIRGLFTQIHPPLERILGPWLEHDAVLEVLAAWPTPAALRHAGKARI
DAKLKKYGARRHTAWASTVIDALDEQSVIVVGTDAAGLVIPHLARQMISLHTQRADVAAHLETMVEAHPLYPVLTSMPGVAVRTAAIIIAEISGKTFTSA
AALSSYAGLAPTTRQSGTSIKSERVSHSGNKRLKRALFLSAFASIRFDPASREYYDRKRAQGKRHNQALIALAHRRLTVLFAMIRDGSLYDVPELKIA

 

Blast result :
Comments
ISAar17 is 95% aa similar to ISAar2.
ISAar17 was reconstructed in silico by deletion of ISAar18 sequence.
There are 2 copies of the couple ISAar17-ISAar18 on this genome.
References
1] ISfinder annotation (2009)