ISRjo1

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008269 ND Rhodococcus jostii
Rhodococcus jostii RHA1 plasmid pRHL1
DNA section
IS Length : 1967 bp

Ends


IR Length : 21/26

IRL : CCATGGATCAGGCCGCCCGCGGCATCAACTTCACCCATCGGGAACTGGAC
IRR : CCGTGGATCAGGACGACGGGGGCACCTTCTCCCACATCGTGGTAGTTGGT

Insertion site


Left flankDirect repeatRight flankDR Length
ATCACCTGGAATCGGGCCCC0

DNA sequence

CCATGGATCAGGCCGCCCGCGGCATCAACTTCACCCATCGGGAACTGGACCAGAACTTCCTCACCGTCGTCACCTAAGGCACCGGCCACCACACGCCGAA
CGCCCGCGACCGGAAGTCCACAACGATTGCACCGTCACGGAGTAAACCTGGAAGCACCGATTGGTATGAGCGCGTGAGAGTGTCATAAAAGCGAAATGCC
CTGTCGTAGTGGAAGAATAAGACTTCTCAAGGGTCAGATTCAGCCACAAAGAAGGGCATCTCGCAGGTGCAACTATCTCACACCCGACCAGTCGTCGCGG
CCAGGTTCGACGACCCCAATCTGATATCGACCGCGGGACTGGTCCCGGTGATGGCATTGGCGCAGGCCAGCGGCCTGCTCACCCTCGCCGATCAGCACCT
GAGCGTGCCGACCGACAAAGGCGCCCACGCCGGCCGCAAGATCGGGTCCCTGATCGGCGGGATGGTCGCCGGCGCCGACAGCATCGCCGACCTGGCCATT
GTGCGGCACGGCGCGATGGGAACCGTCTTCGACCGACCCTACGCACCGTCGACACTGGGATCGTTCCTTCGCCAGTTCACCTTCGGGCACGTCCGCCAAC
TCGACGCCGTCGCCTCGCGGTTCCTGGGCGCTCTCGCCGCGAAGACCCCGCTGGTCACCGGCATCGACACCGGGCGGGTACTGGTCGATATCGACGATAC
GATCATCGAGGTCCACGGCCACGGCAAACAGGGCTCCGGATACGGCTACTCCGGGGTACGCGGGCTGAACGCCCTGCTCACCACGGTCACCACCGACACC
TGCGCGCCGGTGATCATCGGTCAACGCCTACGCCGCGGAGCATGCGGCTCCGCACGCGGCGCCGCCCGGATGGTCTCCGACGCCCTGGTCACCGTAGACC
GGCTGCGCACCCAGGCTGCAGGAACCAGCGGTAACGGCGCGCCGAAGGTTCTGTTTCGAGCCGATTCGGCGTTCTATGGCCATCCCACGATCGGTGCCGC
GATTCGTGCCGGCGCCGATGTGTCGGTCACCGTGCGCCTGACCTCCACCATCAAGCGAGCGATCGCATCCATCGACACCGACGAGTCCGCGTGGACGCCG
ATCGAATACACCGACGCCCTCTACGACGAGGCCACCGACACCTGGATCTCGCGGGCGGAGGTCGCCGAGATCCCGTTCACCGCGTTCGCCTCGCAGAAGA
AGGCCCACCAGATCCCCGGGCGGCTGGTGGTGCGCCGCATCCCCGACCTGCGACCACCCAAGGACCAGGGCCAGGGCACGTTGTTCGACATCTGGCGGTT
CCACGCCTTCTTCACCACCACCGACCCCGACGACCTCGACACCGTCGACGCCGACAAGACCCACCGCCAACACGCCGTCATCGAGCAGGTGCACGCGGAC
CTGAAGAACTCCGCACTCGCCCATCTTCCGTCGAACTCGTTTTCGGCGAACGCCGCCTGGCTGGTCTGCGCGGTCATGGCCTTCAACCTGACCCGTGCCG
CCGGCACCCTCACGGCTGACCCGAAGCTGACGAAAGCGACCACCGGCACCCTCCGCCGCACCCTCGTCTCGGTCCCTGCCCGCATCGCCTCCTCCGCCCG
ACGGCTGACGCTGCACCTACCGACCGACTGGCCGTGGGAAACACCATGGCACAACCTGTTCGACAGAACCTTCGGCCGCAATCACCCGATCATCGTCTAA
CACCCGCGACACCTGCCCGCCATCGACGCGAAAGAGCCAGTGGAACAACCCGACACGCAGGTCGGACGATCACCCACGCCCGTAACCAACTCGCTGACGC
ACAACGAAACTCACCACGGACACATCAGTCGATCGGTGGATTTAGGGTAAACCAATGACCACCACAACCGACCAATCACCCGAAATCGCGAAGACCATCG
ACGTCAACGGTATCGCTACCAACTACCACGATGTGGGAGAAGGTGCCCCCGTCGTCCTGATCCACGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1434 bp477 aa2671700+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MQLSHTRPVVAARFDDPNLISTAGLVPVMALAQASGLLTLADQHLSVPTDKGAHAGRKIGSLIGGMVAGADSIADLAIVRHGAMGTVFDRPYAPSTLGSF
LRQFTFGHVRQLDAVASRFLGALAAKTPLVTGIDTGRVLVDIDDTIIEVHGHGKQGSGYGYSGVRGLNALLTTVTTDTCAPVIIGQRLRRGACGSARGAA
RMVSDALVTVDRLRTQAAGTSGNGAPKVLFRADSAFYGHPTIGAAIRAGADVSVTVRLTSTIKRAIASIDTDESAWTPIEYTDALYDEATDTWISRAEVA
EIPFTAFASQKKAHQIPGRLVVRRIPDLRPPKDQGQGTLFDIWRFHAFFTTTDPDDLDTVDADKTHRQHAVIEQVHADLKNSALAHLPSNSFSANAAWLV
CAVMAFNLTRAAGTLTADPKLTKATTGTLRRTLVSVPARIASSARRLTLHLPTDWPWETPWHNLFDRTFGRNHPIIV

 

Blast result :
Comments
ISRjo1 is 58% aa similar to IS220.
References
1] ISfinder annotation (2009)
2] McLeod,M.P., Warren,R.L., Hsiao,W.W., Araki,N., Myhre,M., Fernandes,C., Miyazawa,D., Wong,W., Lillquist,A.L., Wang,D., Dosanjh,M., Hara,H., Petrescu,A., Morin,R.D., Yang,G., Stott,J.M., Schein,J.E., Shin,H., Smailus,D., Siddiqui,A.S., Marra,M.A., Jones,S.J., Holt,R., Brinkman,F.S., Miyauchi,K., Fukuda,M., Davies,J.E., Mohn,W.W. and Eltis,L.D. (2006) Proc. Natl. Acad. Sci. U.S.A. 103 (42), 15582-15587