ISApr11
- Family IS1380
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| ND | Alpha proteobacterium | Alpha proteobacterium BAL199 |
DNA section
IS Length : 1667 bp
Ends
IR Length : 14/15
IRL : CCGCATTCCCCAAGTAATCCGGTGATTTAGCTGTCGTGGACATGGTATTT
IRR : CCGACATTCCCCAAGCGGCGTGCCTTCTGACGTCAAGATCGCCTGACTGC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GCGGTTTAGC | CTTCACTTCC | 0 |
DNA sequence
CCGCATTCCCCAAGTAATCCGGTGATTTAGCTGTCGTGGACATGGTATTTCTGATACAAATCATGGTGTTGATTGCTGCGAGGGACGGGTTTCATGGATC
ACCCATCGGGTGCGGGTTCGCAGCGGGCAGATCGGGTGGATTTCGACCCTCGTGTTCGGCTGGAATTCAAGGGCGCGCTGCTGAGTTCGGACGGCGGTCT
TTTGGTGATGCGCGAGATGGATGACGCGCTCGGGCTGTCCGCTCTGGCGTCAGCGGCGCTGTGCGACACCCGCCGAGGCAAAAACACCGTCCACCGGCTC
GACGGGCTATTCCGGCAGTCAGTGTTCGGTCGTCTGGCCGGATATGAAGATGTAAACGATGCCGACCGTCTCGCCCTCGATCCGGTCATGCGCCAGGTCG
TGGGCGGCAGGACTGTCGATGCGCAGGCGGCCTCGGCCTCGCAGATGGGGCGGTTCGAGACGGAGACGCTGGCCTTGGCCGAGAACCGGGCGGCGCTGGC
CGACTTGAACGGGCAATGGATCGACCGGTTTCATGATCGCAACGGGCTGAAGTTCATCGTGCTGGACATGGACAGCTCGGTCAGCCCAACCCATGGCAAT
CAGGAAGGGTCCGCCTGGAACGGGCACTTTGACTGCACCTGCTACCACCCGAACTTCTTGTTCAACCAGTTCGGCATGCTGGAACGCTGCGCCCTGCGCC
ACGGCAACGTCCACAGCGCCGACGGCTGGCGGGACGTGCTCGACCCGGTGATCGCTCGCTATGCCAAACGTGACATCCTGCGGTTCTTCCGTGCTGACGC
CGCCTACGCGATACCGGCAATCTATGTGCGGCTGGAAGAAGCAGGCTATTTCTATGCCATCCGGCTGCCCGCCAACAACGTCCTGCGTGAGAAGATCGCG
CACCGGCTGACGCGGCCCGTGGGGCGGCCGTCGCTGACCAAGGTCAAGCGGTACTTCGTCGATTTCGACTATCAGGCGGCGTCTTGGGACAAGGAACGCC
GTGTGATCGCCAAGATCGAATGGCACCCGGGCAAGCTGTTCCCCCGCGTGGGTTTCATCGTCACCAACTTGCCGATGGAGCCGGATTGGGTGATGGGCTT
CTATAACCAGCGCGGCACCGCCGAGCAGCACATCAAGGAAGGTAAATACGCCTTCCATTGGACGCGGCTGTCGTGCCGGAAGTTCCGCGATAACGAGGTG
CGGCTGCAATTGCATGCACTGGCCTACAATCTGGCAACCTTCCTGCGCTGTATCGAACTGCCCGAGGCCATGGCGGACTGGTCATTGACCAGCCTGCAAC
TCAAGCTGATCAAGATCGGCGCCCGCGTCGTGCGTCACGCTCGCGCCATCACCTTCCAACTGGCCGAGGTAGCCGTCACCGGCCCGATGGTCCGCGCCAT
CCTCGCCGTGATCCGCCGCCTTCGAGAGCCACCGCTATGCGCGTGACCGAGGTCCAGGCCAAAACTGAACGAAAGCGGCAGGACAAGTCTGCCCGATGCG
CTGAAAAACGTCGCCGCCGGGCCGGGATGCTGCGGGTTTACGGGCCGATTCGCCCAACTTCGGGCGTTTGCGCGACCACAGACCCCGCGCGGGGCGGAAA
ACGCTTGATCCGCTGGCGCAGTCAGGCGATCTTGACGTCAGAAGGCACGCCGCTTGGGGAATGTCGG
ACCCATCGGGTGCGGGTTCGCAGCGGGCAGATCGGGTGGATTTCGACCCTCGTGTTCGGCTGGAATTCAAGGGCGCGCTGCTGAGTTCGGACGGCGGTCT
TTTGGTGATGCGCGAGATGGATGACGCGCTCGGGCTGTCCGCTCTGGCGTCAGCGGCGCTGTGCGACACCCGCCGAGGCAAAAACACCGTCCACCGGCTC
GACGGGCTATTCCGGCAGTCAGTGTTCGGTCGTCTGGCCGGATATGAAGATGTAAACGATGCCGACCGTCTCGCCCTCGATCCGGTCATGCGCCAGGTCG
TGGGCGGCAGGACTGTCGATGCGCAGGCGGCCTCGGCCTCGCAGATGGGGCGGTTCGAGACGGAGACGCTGGCCTTGGCCGAGAACCGGGCGGCGCTGGC
CGACTTGAACGGGCAATGGATCGACCGGTTTCATGATCGCAACGGGCTGAAGTTCATCGTGCTGGACATGGACAGCTCGGTCAGCCCAACCCATGGCAAT
CAGGAAGGGTCCGCCTGGAACGGGCACTTTGACTGCACCTGCTACCACCCGAACTTCTTGTTCAACCAGTTCGGCATGCTGGAACGCTGCGCCCTGCGCC
ACGGCAACGTCCACAGCGCCGACGGCTGGCGGGACGTGCTCGACCCGGTGATCGCTCGCTATGCCAAACGTGACATCCTGCGGTTCTTCCGTGCTGACGC
CGCCTACGCGATACCGGCAATCTATGTGCGGCTGGAAGAAGCAGGCTATTTCTATGCCATCCGGCTGCCCGCCAACAACGTCCTGCGTGAGAAGATCGCG
CACCGGCTGACGCGGCCCGTGGGGCGGCCGTCGCTGACCAAGGTCAAGCGGTACTTCGTCGATTTCGACTATCAGGCGGCGTCTTGGGACAAGGAACGCC
GTGTGATCGCCAAGATCGAATGGCACCCGGGCAAGCTGTTCCCCCGCGTGGGTTTCATCGTCACCAACTTGCCGATGGAGCCGGATTGGGTGATGGGCTT
CTATAACCAGCGCGGCACCGCCGAGCAGCACATCAAGGAAGGTAAATACGCCTTCCATTGGACGCGGCTGTCGTGCCGGAAGTTCCGCGATAACGAGGTG
CGGCTGCAATTGCATGCACTGGCCTACAATCTGGCAACCTTCCTGCGCTGTATCGAACTGCCCGAGGCCATGGCGGACTGGTCATTGACCAGCCTGCAAC
TCAAGCTGATCAAGATCGGCGCCCGCGTCGTGCGTCACGCTCGCGCCATCACCTTCCAACTGGCCGAGGTAGCCGTCACCGGCCCGATGGTCCGCGCCAT
CCTCGCCGTGATCCGCCGCCTTCGAGAGCCACCGCTATGCGCGTGACCGAGGTCCAGGCCAAAACTGAACGAAAGCGGCAGGACAAGTCTGCCCGATGCG
CTGAAAAACGTCGCCGCCGGGCCGGGATGCTGCGGGTTTACGGGCCGATTCGCCCAACTTCGGGCGTTTGCGCGACCACAGACCCCGCGCGGGGCGGAAA
ACGCTTGATCCGCTGGCGCAGTCAGGCGATCTTGACGTCAGAAGGCACGCCGCTTGGGGAATGTCGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1353 bp | 450 aa | 94 | 1446 | + | No |
Chemistry : DDE
ORF sequence :
MDHPSGAGSQRADRVDFDPRVRLEFKGALLSSDGGLLVMREMDDALGLSALASAALCDTRRGKNTVHRLDGLFRQSVFGRLAGYEDVNDADRLALDPVMR
QVVGGRTVDAQAASASQMGRFETETLALAENRAALADLNGQWIDRFHDRNGLKFIVLDMDSSVSPTHGNQEGSAWNGHFDCTCYHPNFLFNQFGMLERCA
LRHGNVHSADGWRDVLDPVIARYAKRDILRFFRADAAYAIPAIYVRLEEAGYFYAIRLPANNVLREKIAHRLTRPVGRPSLTKVKRYFVDFDYQAASWDK
ERRVIAKIEWHPGKLFPRVGFIVTNLPMEPDWVMGFYNQRGTAEQHIKEGKYAFHWTRLSCRKFRDNEVRLQLHALAYNLATFLRCIELPEAMADWSLTS
LQLKLIKIGARVVRHARAITFQLAEVAVTGPMVRAILAVIRRLREPPLCA
QVVGGRTVDAQAASASQMGRFETETLALAENRAALADLNGQWIDRFHDRNGLKFIVLDMDSSVSPTHGNQEGSAWNGHFDCTCYHPNFLFNQFGMLERCA
LRHGNVHSADGWRDVLDPVIARYAKRDILRFFRADAAYAIPAIYVRLEEAGYFYAIRLPANNVLREKIAHRLTRPVGRPSLTKVKRYFVDFDYQAASWDK
ERRVIAKIEWHPGKLFPRVGFIVTNLPMEPDWVMGFYNQRGTAEQHIKEGKYAFHWTRLSCRKFRDNEVRLQLHALAYNLATFLRCIELPEAMADWSLTS
LQLKLIKIGARVVRHARAITFQLAEVAVTGPMVRAILAVIRRLREPPLCA
Blast result :
Comments
ISApr11 is 95% aa similar to IS1247.
Genome in progress : Accession number : NZ_ABHC01000024.
Genome in progress : Accession number : NZ_ABHC01000024.
References
1] ISfinder annotation (2009)
2] Hagstrom,A., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct submission GenBank.
2] Hagstrom,A., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct submission GenBank.