ISAcr5
- Family IS1380
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_009484 | ND | Acidiphilium cryptum | Acidiphilium cryptum JF-5 |
DNA section
IS Length : 1618 bp
Ends
IR Length : 12/17
IRL : CCTGAATTATGCGTGAGGGTTGGCAGGCATAGCGTAAACCGTTGATTTGA
IRR : CGGGATTATTCGCGAGCGCATTTCCTCTGATTTTTCTCAGGCGGGTTGTG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CGGTTCTTAG | CTAAGTTGAG | 0 |
DNA sequence
CCTGAATTATGCGTGAGGGTTGGCAGGCATAGCGTAAACCGTTGATTTGATCTAAGAATTTGGTGTCGAGACCAAATCTTCATCAGCATGGAACGTGATG
CCCGCCACGGTTGAAACGACCCCATGCCTCCCCGGTCTGTCACCTGTCGCCGGCAAACCGGTGCTGGCCCGCTTCGACGGCGAGATGCTGTCCTCAGACG
GCGGTCTGCTGGCATTACGCGAGGTCGAGAAGCGGCTGGGGATTGCCGCGCAGTTGGCAGCCTGCATCGATGATCCGCGCACGCCGGAGGGCGTCCAGCA
TGGGCTCGACGAGATCATTCGGTTTCGCATGTTGATGATCGCGGCCGGTTACGAGGATGGCAACGACGCCGACCGGTTGCGCAACGACCCGATGTTCAAA
CTCGCGATGGAGCGTCTGCCCGAGGCGGGCGATCTGTGCTCGCAAGCGACGGTTTCACGCACCGAGAATTTGCCCGGGCCTCGCGCGCTGCTGCGCATGG
GCCTGGCGATGGTCGAGCATTATTGCGCGAGCTTCCGCACCATACCCAACCGGATTGTGCTGGATATCGACGATACCTTCGATGCCGCTCACGGCGCGCA
GCAACTCTGCTTGTTCAACGCACACCACAACGAATACGGATCTCAACCGATTGTGGTGTTCGACGGCGACGGCCGGATGCTCGCCGCGGTGCTGCGTCCG
GCGTGTCGGCCAAAAGGGGCCCAGATCGTCAAATGGTTGCGCCGGCTGATCGACGCCATCCGCGGCCATTGGCCACGTACCGCGATCATGCTGCGCGGTG
ATTCGCACTTCTGCACGCCGGCAGTTCTGCGGTTCTGTCGAGCGCGTCGCCTCGATTACATCTTCGGCGTCGCACGACCACGACGCTGCGCAAACACGTC
ATCGCGCTGGAGGCCAGCACCACGGCGCGCGCGCAACAGGCTCCGGGAGAGAAAATCCGGCGGTTCAAAGAGTTCAATGATGGCGCAGCAAGCTGGGACC
GCGTCGAGCGGATCATCGCCCGCGTCGAGGCCTGGCCGCTGGGGGGCGATACCCGCTTCATCGTCACCAGCCTGAAGGCTGGTTCCCCGCGCACCCTGTA
TCAAGAGATCTACTGCGCGCGCGGCCAGGCCGAGAACCATATCAAAGGCGTGGAAGACCCATCTTGCGGCCGACCGGACCTCGTGCTCGCGGGCCAGCGC
CAACCAGATGCGCCTGTTTCTGCATATCGGCGCCTACTGGCTGATGTGGAGTTTGCGCTCCCTGATGCCGCGTCGGTCGCGCTGGCGTGGTATCCAGTTC
GATACCCTGCGCCTGCGCCTGATCAAACTCGCCGTCCGCCTCGAAACCCTGAAACGCTCGATCCGCCTGCATCTGCCGCGCTCAATGCCGGACCAGGGAA
TCCTCGGCTATGCCCCGGCCAGACTGCCCAGGCTGGTCAGCTGATCCCAGGGGCGTTTGCCCCGTCCGGCCCCGATCTCTGCCACATCCAACGCCAACAC
ATCGTAGAGCCCACCAAAAACAGCTAGGTTCGGCCGGTAAGCCATCACGCCCGCACGATGTCAGGTTGCACAACCCGCCTGAGAAAAATCAGAGGAAATG
CGCTCGCGAATAATCCCG
CCCGCCACGGTTGAAACGACCCCATGCCTCCCCGGTCTGTCACCTGTCGCCGGCAAACCGGTGCTGGCCCGCTTCGACGGCGAGATGCTGTCCTCAGACG
GCGGTCTGCTGGCATTACGCGAGGTCGAGAAGCGGCTGGGGATTGCCGCGCAGTTGGCAGCCTGCATCGATGATCCGCGCACGCCGGAGGGCGTCCAGCA
TGGGCTCGACGAGATCATTCGGTTTCGCATGTTGATGATCGCGGCCGGTTACGAGGATGGCAACGACGCCGACCGGTTGCGCAACGACCCGATGTTCAAA
CTCGCGATGGAGCGTCTGCCCGAGGCGGGCGATCTGTGCTCGCAAGCGACGGTTTCACGCACCGAGAATTTGCCCGGGCCTCGCGCGCTGCTGCGCATGG
GCCTGGCGATGGTCGAGCATTATTGCGCGAGCTTCCGCACCATACCCAACCGGATTGTGCTGGATATCGACGATACCTTCGATGCCGCTCACGGCGCGCA
GCAACTCTGCTTGTTCAACGCACACCACAACGAATACGGATCTCAACCGATTGTGGTGTTCGACGGCGACGGCCGGATGCTCGCCGCGGTGCTGCGTCCG
GCGTGTCGGCCAAAAGGGGCCCAGATCGTCAAATGGTTGCGCCGGCTGATCGACGCCATCCGCGGCCATTGGCCACGTACCGCGATCATGCTGCGCGGTG
ATTCGCACTTCTGCACGCCGGCAGTTCTGCGGTTCTGTCGAGCGCGTCGCCTCGATTACATCTTCGGCGTCGCACGACCACGACGCTGCGCAAACACGTC
ATCGCGCTGGAGGCCAGCACCACGGCGCGCGCGCAACAGGCTCCGGGAGAGAAAATCCGGCGGTTCAAAGAGTTCAATGATGGCGCAGCAAGCTGGGACC
GCGTCGAGCGGATCATCGCCCGCGTCGAGGCCTGGCCGCTGGGGGGCGATACCCGCTTCATCGTCACCAGCCTGAAGGCTGGTTCCCCGCGCACCCTGTA
TCAAGAGATCTACTGCGCGCGCGGCCAGGCCGAGAACCATATCAAAGGCGTGGAAGACCCATCTTGCGGCCGACCGGACCTCGTGCTCGCGGGCCAGCGC
CAACCAGATGCGCCTGTTTCTGCATATCGGCGCCTACTGGCTGATGTGGAGTTTGCGCTCCCTGATGCCGCGTCGGTCGCGCTGGCGTGGTATCCAGTTC
GATACCCTGCGCCTGCGCCTGATCAAACTCGCCGTCCGCCTCGAAACCCTGAAACGCTCGATCCGCCTGCATCTGCCGCGCTCAATGCCGGACCAGGGAA
TCCTCGGCTATGCCCCGGCCAGACTGCCCAGGCTGGTCAGCTGATCCCAGGGGCGTTTGCCCCGTCCGGCCCCGATCTCTGCCACATCCAACGCCAACAC
ATCGTAGAGCCCACCAAAAACAGCTAGGTTCGGCCGGTAAGCCATCACGCCCGCACGATGTCAGGTTGCACAACCCGCCTGAGAAAAATCAGAGGAAATG
CGCTCGCGAATAATCCCG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1347 bp | 448 aa | 98 | 1444 | + | No |
Chemistry : DDE
ORF sequence :
MPATVETTPCLPGLSPVAGKPVLARFDGEMLSSDGGLLALREVEKRLGIAAQLAACIDDPRTPEGVQHGLDEIIRFRMLMIAAGYEDGNDADRLRNDPMF
KLAMERLPEAGDLCSQATVSRTENLPGPRALLRMGLAMVEHYCASFRTIPNRIVLDIDDTFDAAHGAQQLCLFNAHHNEYGSQPIVVFDGDGRMLAAVLR
PACRPKGAQIVKWLRRLIDAIRGHWPRTAIMLRGDSHFCTPAVLRFCRARRLDYIFGVARPRRCANTSSRWRPAPRRARNRLRERKSGGSKSSMMAQQAG
TASSGSSPASRPGRWGAIPASSSPA*RLVPRAPCIKRSTARAARPRTISKAWKTHLAADRTSCSRASANQMRLFLHIGAYWLMWSLRSLMPRRSRWRGIQ
FDTLRLRLIKLAVRLETLKRSIRLHLPRSMPDQGILGYAPARLPRLVS
KLAMERLPEAGDLCSQATVSRTENLPGPRALLRMGLAMVEHYCASFRTIPNRIVLDIDDTFDAAHGAQQLCLFNAHHNEYGSQPIVVFDGDGRMLAAVLR
PACRPKGAQIVKWLRRLIDAIRGHWPRTAIMLRGDSHFCTPAVLRFCRARRLDYIFGVARPRRCANTSSRWRPAPRRARNRLRERKSGGSKSSMMAQQAG
TASSGSSPASRPGRWGAIPASSSPA*RLVPRAPCIKRSTARAARPRTISKAWKTHLAADRTSCSRASANQMRLFLHIGAYWLMWSLRSLMPRRSRWRGIQ
FDTLRLRLIKLAVRLETLKRSIRLHLPRSMPDQGILGYAPARLPRLVS
Blast result :
Comments
ISAcr5 is 61% aa similar to ISRssp8. There is a STOP codon in phase, the transposase is probably not active.
References
1] ISfinder annotation (2009)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Magnuson,T. and Richardson,P. (2006) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Magnuson,T. and Richardson,P. (2006) Direct submission GenBank.