ISAcr4
- Family IS1380
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_009469 | ND | Acidiphilium cryptum | Acidiphilium cryptum JF-5 Acidiphilium cryptum JF-5 plasmid pACRY03 |
DNA section
IS Length : 1678 bp
Ends
IR Length : 13/16
IRL : CCGGAATTATGCATGAAGGTTGGCGAGCATAGCGTAGTCCATTGATTCGA
IRR : CCGGGATTATTCACGAGCGCATTTCCTCTGATTTTTCTCAGGCGGTCTGT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AAAAGCGGTA | CTAT | CATATCGAGA | 4 |
| GCCACCCATG | CTAG | GAAGCTCAAG | 4 |
DNA sequence
CCGGAATTATGCATGAAGGTTGGCGAGCATAGCGTAGTCCATTGATTCGATGTAAGAATTTGTTGTCGAGACAAATCTTCACCACGACGGAACGCGATGC
TCGCCTCGGTTGCAAATACCCCAATTCTCCCTGGTCTGTCACCTGTCGCCGGCAAATCGATCGAGGCCCGCTTCGACGGCGAGATGCTGTCCTCTGACGG
CGGTCTGCTGGCATTGCGCGAGGTCGAGAAGCGGCTGGGGATTGCCGCGCAGTTGGCAGCCTGCATCGATGATCCGCGCACGCCGGAGCGCGTCCAGCAT
GGGCTCGACGAGATCATTCGGTTTCGCATGTTGATGATCGCGGCCGGTTACGAGGATGGCAACGACGCCGACCGGTTGCGCAACGACCCGATGTTCAAAC
TCGCGATGGAGCGTCTGCCCGAGGCGGGCGATCTGTGCTCGCAAGCGACGATTTCACGCACCGAGAATTTGCCCGGTCCTCGCGCGCTGCTGCGCATGGG
CCTGGCGATGGTCGAGCATTATTGTGCGAGTTTCCGCACCATACCCAACCGGGTCGTGCTCGATATCGACGATACCTTCGATGCCGCTCACGGCGCGCAG
CAACTCTGCTTGTTCAACGCACACCACGATGAGTACGGTTTCCAGCCGATTGTGGTATTCGACGGCGACGGCCGGATGCTCGCCGCGGTGCTGCGTCCGG
CGTGCCGGCCAAAAGGTAGCCAGATCGTCAAATGGTTGCGCCGGCTGATCGACGCCATCCGCAGCCACTGGCCCCGCACCGCGATCATGCTGCGCGGTGA
TTCGCACTACTGCACGCCGGAGGTGCTGCGGTTCTGTCGGGCGCGTCGCCTCGATTACATCTTCGGCGTCGCACCGACCACGACGCTGCGCAAGCACGTC
ATCGCGCTGGAGGCCAGCACCACGGCGCGCGCGCAACAAGCTCCGGGAGAGAAAATCCGGCGGTTCAAAGAGTTCAATGATGGCGCAGCAAGCTGGGACC
GCGTCGAGCGGATCATCGCCCGCGTCGAGGCCGGGCCGATGGGGGTCGATACCCGCTTCATCGTTACCAGCCTGAAGGCAGGTTCCCCGCGCACCCTGTA
TCAAGAGATCTACTGCGCGCGTGGCCAGGCCGAGAACCATATCAAGGCGTGGAAGACCCATCTTGCCGCCGACCGGACCTCGTGCTCGCGGGCCAGCGCC
AACCAGATGCGCCTGTTTCTGCATATCGGCGCCTACTGGCTGATGTGGAGTTTGCGCTCCCTGATGCCGCGCCGGTCGCGCTGGCGTGGTATCCAGTTCG
ATACCCTGCGCCTGCGCCTGATCAAACTCGCCGTCCGCCTCGAAACCCTGAAACGCTCGATCCGTCTGCATCTGCCGCGCTCAATGCCAGACCAGGCGAT
CCTCGGCTATGCCCTGGCCAGACTGCCCAGGCTGGTCATCTGATCACAGGGGCGTTTGCCCCGTCCGGTCCCGATCTCTGCCACATCCAACGCCAACACA
TCATAGAGCCCACCAAAACCAGCCAAGTTCGGCCGGTAAGCCATCACGCCCGCACGACGTCAGGTTGAACAGACCGCCTGAGAAAAATCAGAGGAAATGC
GCTCGTGAATAATCCCGG
TCGCCTCGGTTGCAAATACCCCAATTCTCCCTGGTCTGTCACCTGTCGCCGGCAAATCGATCGAGGCCCGCTTCGACGGCGAGATGCTGTCCTCTGACGG
CGGTCTGCTGGCATTGCGCGAGGTCGAGAAGCGGCTGGGGATTGCCGCGCAGTTGGCAGCCTGCATCGATGATCCGCGCACGCCGGAGCGCGTCCAGCAT
GGGCTCGACGAGATCATTCGGTTTCGCATGTTGATGATCGCGGCCGGTTACGAGGATGGCAACGACGCCGACCGGTTGCGCAACGACCCGATGTTCAAAC
TCGCGATGGAGCGTCTGCCCGAGGCGGGCGATCTGTGCTCGCAAGCGACGATTTCACGCACCGAGAATTTGCCCGGTCCTCGCGCGCTGCTGCGCATGGG
CCTGGCGATGGTCGAGCATTATTGTGCGAGTTTCCGCACCATACCCAACCGGGTCGTGCTCGATATCGACGATACCTTCGATGCCGCTCACGGCGCGCAG
CAACTCTGCTTGTTCAACGCACACCACGATGAGTACGGTTTCCAGCCGATTGTGGTATTCGACGGCGACGGCCGGATGCTCGCCGCGGTGCTGCGTCCGG
CGTGCCGGCCAAAAGGTAGCCAGATCGTCAAATGGTTGCGCCGGCTGATCGACGCCATCCGCAGCCACTGGCCCCGCACCGCGATCATGCTGCGCGGTGA
TTCGCACTACTGCACGCCGGAGGTGCTGCGGTTCTGTCGGGCGCGTCGCCTCGATTACATCTTCGGCGTCGCACCGACCACGACGCTGCGCAAGCACGTC
ATCGCGCTGGAGGCCAGCACCACGGCGCGCGCGCAACAAGCTCCGGGAGAGAAAATCCGGCGGTTCAAAGAGTTCAATGATGGCGCAGCAAGCTGGGACC
GCGTCGAGCGGATCATCGCCCGCGTCGAGGCCGGGCCGATGGGGGTCGATACCCGCTTCATCGTTACCAGCCTGAAGGCAGGTTCCCCGCGCACCCTGTA
TCAAGAGATCTACTGCGCGCGTGGCCAGGCCGAGAACCATATCAAGGCGTGGAAGACCCATCTTGCCGCCGACCGGACCTCGTGCTCGCGGGCCAGCGCC
AACCAGATGCGCCTGTTTCTGCATATCGGCGCCTACTGGCTGATGTGGAGTTTGCGCTCCCTGATGCCGCGCCGGTCGCGCTGGCGTGGTATCCAGTTCG
ATACCCTGCGCCTGCGCCTGATCAAACTCGCCGTCCGCCTCGAAACCCTGAAACGCTCGATCCGTCTGCATCTGCCGCGCTCAATGCCAGACCAGGCGAT
CCTCGGCTATGCCCTGGCCAGACTGCCCAGGCTGGTCATCTGATCACAGGGGCGTTTGCCCCGTCCGGTCCCGATCTCTGCCACATCCAACGCCAACACA
TCATAGAGCCCACCAAAACCAGCCAAGTTCGGCCGGTAAGCCATCACGCCCGCACGACGTCAGGTTGAACAGACCGCCTGAGAAAAATCAGAGGAAATGC
GCTCGTGAATAATCCCGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1347 bp | 448 aa | 97 | 1443 | + | No |
Chemistry : DDE
ORF sequence :
MLASVANTPILPGLSPVAGKSIEARFDGEMLSSDGGLLALREVEKRLGIAAQLAACIDDPRTPERVQHGLDEIIRFRMLMIAAGYEDGNDADRLRNDPMF
KLAMERLPEAGDLCSQATISRTENLPGPRALLRMGLAMVEHYCASFRTIPNRVVLDIDDTFDAAHGAQQLCLFNAHHDEYGFQPIVVFDGDGRMLAAVLR
PACRPKGSQIVKWLRRLIDAIRSHWPRTAIMLRGDSHYCTPEVLRFCRARRLDYIFGVAPTTTLRKHVIALEASTTARAQQAPGEKIRRFKEFNDGAASW
DRVERIIARVEAGPMGVDTRFIVTSLKAGSPRTLYQEIYCARGQAENHIKAWKTHLAADRTSCSRASANQMRLFLHIGAYWLMWSLRSLMPRRSRWRGIQ
FDTLRLRLIKLAVRLETLKRSIRLHLPRSMPDQAILGYALARLPRLVI
KLAMERLPEAGDLCSQATISRTENLPGPRALLRMGLAMVEHYCASFRTIPNRVVLDIDDTFDAAHGAQQLCLFNAHHDEYGFQPIVVFDGDGRMLAAVLR
PACRPKGSQIVKWLRRLIDAIRSHWPRTAIMLRGDSHYCTPEVLRFCRARRLDYIFGVAPTTTLRKHVIALEASTTARAQQAPGEKIRRFKEFNDGAASW
DRVERIIARVEAGPMGVDTRFIVTSLKAGSPRTLYQEIYCARGQAENHIKAWKTHLAADRTSCSRASANQMRLFLHIGAYWLMWSLRSLMPRRSRWRGIQ
FDTLRLRLIKLAVRLETLKRSIRLHLPRSMPDQAILGYALARLPRLVI
Blast result :
Comments
ISAcr4 is 71% aa similar to ISRssp8.
References
1] ISfinder annotation (2009)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Magnuson,T. and Richardson,P. (2006) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Magnuson,T. and Richardson,P. (2006) Direct submission GenBank.